Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_3816 |
Symbol | mdtE |
ID | 6143911 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 3879877 |
End bp | 3881034 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641618642 |
Product | multidrug efflux system protein MdtE |
Protein accession | YP_001745782 |
Protein GI | 170682056 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.0409403 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAGAA GAAGAAAACT GTTAATACCG TTGTTATTCT GCGGCGCGAT GCTCACCGCC TGCGATGACA AATCGGCGGA AAACGCCGCC GCCATGACGC CTGAGGTCGG TGTCGTCACA CTCTCCCCCG GTTCGGTCAA TGTGTTGAGC GAATTGCCCG GTAGAACCGT TCCTTATGAA GTTGCCGAGA TACGTCCCCA GGTGGGCGGT ATTATCATTA AACGCAACTT TATCGAAGGC GATAAAGTGA ACCAGGGCGA TTCGCTGTAT CAGATTGATC CTGCGCCTTT ACAGGCAGAG CTGAACTCCG CCAAAGGTTC GCTGGCGAAA GCGCTCTCTA CCGCCAGCAA TGCCCGCATC ACCTTTAACC GCCAGGCATC GTTGCTGAAG ACCAACTACG TTAGCCGTCA GGATTACGAC ACCGCGCGCA CCCAGTTGAA TGAAGCAGAA GCCAATGTCA CCGTCGCCAA AGCGGCTGTT GAACAGGCGA CTATCAACCT GCAATACGCA AATGTCACCT CGCCGATTAC GGGCGTCAGC GGGAAATCGT CGGTGACCGT CGGCGCACTC GTTACCGCTA ATCAGGCAGA TTCGCTGGTT ACCGTACAAC GTCTGGACCC GATTTATGTC GATCTCACGC AGTCGGTGCA GGATTTCTTG CGCATGAAAG AAGAGGTCGC CAGTGGGCAA ATCAAACAGG TTCAGGGCAG TACGCCAGTA CAGCTCAATC TGGAAAATGG TAAACGTTAC AGCCAGACTG GCACGCTGAA ATTCTCCGAC CCAACGGTAG ATGAAACCAC GGGCTCCGTG ACGTTACGGG CGATTTTCCC CAACCCAAAT GGTGACTTGC TGCCTGGCAT GTATGTCACG GCATTAGTGG ATGAAGGTAG CCGCCAGAAT GTATTACTGG TGCCGCAGGA AGGCGTCACC CACAACGCCC AGGGTAAAGC AACGGCACTC ATTCTGGATA AAGACGATGT CGTGCAGCTA CGCGAAATTG AAGCCAGCAA AGCCATCGGC GACCAGTGGG TTGTCACCTC TGGCTTGCAG GCCGGCGATC GGGTGATCGT TTCCGGTTTG CAACGCATTC GTCCGGGTAT CAAAGCACGA GCAATTTCCT CCAGCCAGGA AAACGCCAGC ACCGAATCGA AACAATAA
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Protein sequence | MNRRRKLLIP LLFCGAMLTA CDDKSAENAA AMTPEVGVVT LSPGSVNVLS ELPGRTVPYE VAEIRPQVGG IIIKRNFIEG DKVNQGDSLY QIDPAPLQAE LNSAKGSLAK ALSTASNARI TFNRQASLLK TNYVSRQDYD TARTQLNEAE ANVTVAKAAV EQATINLQYA NVTSPITGVS GKSSVTVGAL VTANQADSLV TVQRLDPIYV DLTQSVQDFL RMKEEVASGQ IKQVQGSTPV QLNLENGKRY SQTGTLKFSD PTVDETTGSV TLRAIFPNPN GDLLPGMYVT ALVDEGSRQN VLLVPQEGVT HNAQGKATAL ILDKDDVVQL REIEASKAIG DQWVVTSGLQ AGDRVIVSGL QRIRPGIKAR AISSSQENAS TESKQ
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