| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3616 |
|---|
| Symbol | rpsJ |
|---|
| ID | 6144487 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 3680194 |
|---|
| End bp | 3680505 |
|---|
| Gene Length | 312 bp |
|---|
| Protein Length | 103 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641618443 |
|---|
| Product | 30S ribosomal protein S10 |
|---|
| Protein accession | YP_001745583 |
|---|
| Protein GI | 170683626 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0051] Ribosomal protein S10 |
|---|
| TIGRFAM ID | [TIGR01049] ribosomal protein S10, bacterial/organelle |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000000387491 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.00493043 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAACC AAAGAATCCG TATCCGCCTG AAAGCGTTTG ATCATCGTCT GATCGATCAA
GCAACCGCGG AAATCGTCGA GACTGCCAAG CGCACTGGTG CGCAGGTCCG TGGTCCGATC
CCGCTGCCGA CACGCAAAGA GCGCTTCACT GTTCTGATCT CCCCGCACGT CAACAAAGAC
GCGCGCGATC AGTACGAAAT CCGTACTCAC TTGCGTCTGG TTGACATCGT TGAGCCAACC
GAGAAAACCG TTGATGCTCT GATGCGTCTG GATCTGGCTG CCGGTGTAGA CGTGCAGATC
AGCCTGGGTT AA
|
|---|
| Protein sequence | MQNQRIRIRL KAFDHRLIDQ ATAEIVETAK RTGAQVRGPI PLPTRKERFT VLISPHVNKD
ARDQYEIRTH LRLVDIVEPT EKTVDALMRL DLAAGVDVQI SLG
|
|---|
| |