| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3582 |
|---|
| Symbol | def |
|---|
| ID | 6145836 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 3660925 |
|---|
| End bp | 3661434 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641618409 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_001745549 |
|---|
| Protein GI | 170680840 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0619898 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.143654 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGTTT TGCAAGTGTT ACATATTCCG GACGAGCGGC TTCGCAAAGT TGCTAAACCG
GTAGAAGAAG TGAATGCAGA AATTCAGCGT ATCGTCGATG ATATGTTCGA GACGATGTAC
GCAGAAGAAG GTATTGGCCT GGCGGCAACC CAGGTCGATA TCCATCAACG TATCATTGTT
ATTGATGTTT CGGAAAACCG TGACGAACGG CTGGTGTTAA TCAATCCGGA GCTTTTAGAA
AAAAGCGGCG AAACAGGCAT TGAAGAAGGA TGCCTGTCGA TCCCTGAACA ACGTGCTTTA
GTGCCGCGCG CAGAGAAAGT TAAAATTCGC GCCCTGGACC GCGACGGTAA ACCATTTGAA
CTGGAAGCAG AGGGTCTGTT AGCCATCTGT ATTCAGCATG AGATGGATCA CCTGGTCGGC
AAACTGTTTA TGGATTATCT GTCACCGCTG AAACAACAAC GTATTCGTCA GAAAGTTGAA
AAACTGGATC GTCTGAAAGC CCGGGCTTAA
|
|---|
| Protein sequence | MSVLQVLHIP DERLRKVAKP VEEVNAEIQR IVDDMFETMY AEEGIGLAAT QVDIHQRIIV
IDVSENRDER LVLINPELLE KSGETGIEEG CLSIPEQRAL VPRAEKVKIR ALDRDGKPFE
LEAEGLLAIC IQHEMDHLVG KLFMDYLSPL KQQRIRQKVE KLDRLKARA
|
|---|
| |