| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3555 |
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| Symbol | dusB |
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| ID | 6146960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3637680 |
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| End bp | 3638645 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641618384 |
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| Product | tRNA-dihydrouridine synthase B |
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| Protein accession | YP_001745531 |
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| Protein GI | 170680881 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000446962 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGCATCG GACAATATCA GCTCAGAAAT CGCCTGATCG CAGCGCCCAT GGCTGGCATT
ACAGACAGAC CTTTTCGGAC GTTGTGCTAC GAGATGGGAG CCGGATTGAC AGTATCCGAG
ATGATGTCTT CTAACCCACA GGTTTGGGAA AGCGACAAAT CTCGTTTACG GATGGTGCAC
ATTGATGAAC CCGGTATTCG CACCGTGCAA ATTGCTGGTA GCGATCCGAA AGAAATGGCA
GATGCAGCAC GTATTAACGT GGAAAGCGGT GCCCAGATTA TTGATATCAA TATGGGTTGC
CCGGCTAAAA AAGTGAATCG CAAGCTCGCA GGTTCAGCCC TTTTGCAGTA CCCGGATGTC
GTTAAATCGA TCCTTACCGA GGTCGTCAAT GCAGTGGACG TTCCTGTTAC CCTGAAGATT
CGCACCGGCT GGGCGCCGGA ACACCGTAAC TGCGAAGAGA TTGCCCAACT GGCTGAAGAC
TGTGGCATTC AGGCTCTGAC CATTCATGGC CGTACACGCG CCTGTTTGTT CAATGGAGAA
GCTGAGTACG ACAGTATTCG GGCAGTTAAG CAGAAAGTTT CCATTCCGGT TATCGCGAAT
GGCGACATTA CTGACCCGCT TAAAGCCAGA GCTGTGCTCG ACTATACAGG GGCCGATGCC
CTGATGATAG GCCGCGCAGC TCAGGGAAGA CCCTGGATCT TTCGGGAAAT CCAGCATTAT
CTGGACACTG GGGAGTTGCT GCCCCCGCTG CCTTTGGCAG AGGTTAAGCG CTTGCTTTGC
GCGCACGTTC GGGAACTGCA TGACTTTTAT GGTCCGGCAA AAGGGTACCG AATTGCACGT
AAACACGTTT CCTGGTATCT CCAGGAACAC GCTCCAAATG ACCAGTTTCG GCGCACATTC
AACGCCATTG AGGATGCCAG CGAACAGCTG GAGGCGTTGG AGGCATACTT CGAAAATTTT
GCGTAA
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| Protein sequence | MRIGQYQLRN RLIAAPMAGI TDRPFRTLCY EMGAGLTVSE MMSSNPQVWE SDKSRLRMVH
IDEPGIRTVQ IAGSDPKEMA DAARINVESG AQIIDINMGC PAKKVNRKLA GSALLQYPDV
VKSILTEVVN AVDVPVTLKI RTGWAPEHRN CEEIAQLAED CGIQALTIHG RTRACLFNGE
AEYDSIRAVK QKVSIPVIAN GDITDPLKAR AVLDYTGADA LMIGRAAQGR PWIFREIQHY
LDTGELLPPL PLAEVKRLLC AHVRELHDFY GPAKGYRIAR KHVSWYLQEH APNDQFRRTF
NAIEDASEQL EALEAYFENF A
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