| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3547 |
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| Symbol | |
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| ID | 6143611 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 3628037 |
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| End bp | 3629977 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641618376 |
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| Product | regulatory protein CsrD |
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| Protein accession | YP_001745523 |
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| Protein GI | 170679868 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000352708 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGATTAA CGACGAAATT TTCGGCCTTT GTTACGCTGC TCACCGGGTT AACAATTTTT
GTGACTTTGC TGGGCTGTTC GCTAAGTTTC TACAACGCCA TTCAGTATAA GTTTAGTCAT
CGTGTTCAGG CGGTGGCGAC GGCGATCGAT ACCCACCTGG TGTCGAATGA CTTCAGCACA
TTAAGGCCAC AAATTACCGA ATTAATGATG TCGGCAGATA TCGTTCGTGT AGACCTGCTC
CATGGTGATA AGCAGGTTTA TACCCTGGCC AGAAATGGTA GTTATCGTCC GGTTGGCACC
AACGATCTAT TTCGTGAACT GAGCGTTCCG TTGATAAAGC ATCCGGGGAT GTCGCTGCGT
CTGGTTTATC AGGATCCGAT GGGCAACTAT TTCCATTCGT TGATGACCAC CGCGCCGCTC
ACGGGGGCGA TTGGCTTTAT CATTCTTATG CTCTTCCTGG CGGTACGCTG GTTACAACGG
CAACTTGCCG GGCAAGAATT GCTGGAAACC CGGGCTACTC GTATCTTAAA CGGTGAGCGT
GGCTCTAATG TGTTGGGAAC CATCTATGAA TGGCCGCCCA GAACCAGCAG TGCGCTGGAT
ACGCTGCTTC GTGAAATTCA GAACGCACGC GAACAACACA GCCGTCTTGA TACGCTGATC
CGCTCTTATG CCGCCCAGGA CATGAAAACC GGCCTCAATA ACCGACTCTT CTTCGATAAT
CAGTTAGCAA CGTTACTGGA AGATCAGGAG AAAGTAGGTA CCCACGGGAT CGTGATGATG
ATTCGTCTGC CGGATTTCAA TATGTTGAGT GATACCTGGG GGCACAGCCA GGTTGAAGAA
CAGTTCTTCT CTCTGACGAA TCTGCTGTCG ACATTTATGA TGCGCTACCC TGGCGCACTG
CTGGCGCGTT ACCACCGCAG TGATTTTGCT GCGCTGTTAC CGCACCGAAC GTTAAAAGAG
GCAGAGAGCA TCGCCAGTCA GTTAATCAAA GCCGTCGATA CCTTGCCGAA CAATAAAATG
CTCGATCGCG ACGATATGAT CCACATTGGT ATCTGTGCCT GGCGTAGTGG TCAGGATACC
GAGCAGGTAA TGGAACATGC AGAGTCTGCC ACGCGTAATG CGGGATTGCA GGGCGGCAAT
AGCTGGGCTA TTTACGATGA CTCGTTGCCT GAAAAAGGAC GCGGTAATGT TCGCTGGCGT
ACGCTTATCG AGCAAATGCT GAGTCGCGGC GGCCCGCGCC TTTATCAAAA ACCGGCGGTT
ACTCGCGAAG GTCAGGTTCA TCATCGCGAA CTCATGTGCC GCATCTTCGA TGGTAATGAA
GAGGTTAGCT CGGCGGAGTA TATGCCGATG GTCTTGCAGT TTGGCTTATC GGAAGAGTAT
GACCGCCTGC AAATCAGCCG TCTGATTCCA CTATTGCGTT ACTGGCCGGA GGAAAATCTG
GCGATTCAGG TTACCGTTGA GTCGCTGATT CGCCCGCGTT TTCAGCGTTG GCTGCGCGAT
ACGTTAATGC AATGTGAAAG ATCGCAACGA AAACGCATAA TTATTGAACT TGCAGAGGCC
GATGTAGGTC AACATATCAG TCGCTTACAA CCTGTTATTC GTTTAGTGAA TGCTTTAGGG
GTACGGGTAG CCGTCAACCA GGCTGGTTTG ACGCTGGTAA GCACCAGTTG GATCAAAGAA
CTTAATGTTG AGTTACTCAA GCTCCATCCG GGGCTGGTCA GAAACATTGA GAAGCGAACG
GAGAACCAGC TGCTGGTTCA AAGCCTGGTG GAAGCCTGCT CCGGGACCAG CACCCAGGTT
TACGCCACCG GCGTGCGTTC GCGAAGCGAG TGGCAGACCC TGATTCAGCG CGGTGTTACA
GGTGGGCAAG GGGATTTTTT CGCGTCCTCA CAGCCACTTG ATACTAACGT GAAAAAATAT
TCACAAAGAT ACTCGGTTTA A
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| Protein sequence | MRLTTKFSAF VTLLTGLTIF VTLLGCSLSF YNAIQYKFSH RVQAVATAID THLVSNDFST
LRPQITELMM SADIVRVDLL HGDKQVYTLA RNGSYRPVGT NDLFRELSVP LIKHPGMSLR
LVYQDPMGNY FHSLMTTAPL TGAIGFIILM LFLAVRWLQR QLAGQELLET RATRILNGER
GSNVLGTIYE WPPRTSSALD TLLREIQNAR EQHSRLDTLI RSYAAQDMKT GLNNRLFFDN
QLATLLEDQE KVGTHGIVMM IRLPDFNMLS DTWGHSQVEE QFFSLTNLLS TFMMRYPGAL
LARYHRSDFA ALLPHRTLKE AESIASQLIK AVDTLPNNKM LDRDDMIHIG ICAWRSGQDT
EQVMEHAESA TRNAGLQGGN SWAIYDDSLP EKGRGNVRWR TLIEQMLSRG GPRLYQKPAV
TREGQVHHRE LMCRIFDGNE EVSSAEYMPM VLQFGLSEEY DRLQISRLIP LLRYWPEENL
AIQVTVESLI RPRFQRWLRD TLMQCERSQR KRIIIELAEA DVGQHISRLQ PVIRLVNALG
VRVAVNQAGL TLVSTSWIKE LNVELLKLHP GLVRNIEKRT ENQLLVQSLV EACSGTSTQV
YATGVRSRSE WQTLIQRGVT GGQGDFFASS QPLDTNVKKY SQRYSV
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