| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3522 |
|---|
| Symbol | |
|---|
| ID | 6144037 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 3601794 |
|---|
| End bp | 3603161 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641618351 |
|---|
| Product | putative cryptic C4-dicarboxylate transporter DcuD |
|---|
| Protein accession | YP_001745498 |
|---|
| Protein GI | 170681874 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3069] C4-dicarboxylate transporter |
|---|
| TIGRFAM ID | [TIGR00771] c4-dicarboxylate anaerobic carrier family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00146557 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGGCA TAATTATATC TGTCATCGTA TTAATTACGA TGGGCTATTT GATCCTGAAA
AACTACAAAC CTCAGGTGGT GCTGGCTGCC GCAGGTATCT TCCTGATGAT GTGCGGTGTC
TGGTTAGGGT TCGGTGGTGT GCTCGATCCC GCCAAAAGCA GCGGCTACTT GATCGTCGAT
ATTTATAATG AAATCCTGCG CATGCTGTCC AACCGCATTG CCGGATTGGG GCTGTCGATT
ATGGCAGTGG GCGGTTATGC CCGCTATATG GAGCGCATAG GGGCAAGTCG CGCGATGGTG
AGCTTGTTAA GCCGCCCGTT AAAACTCATT CGCTCGCCGT ATATTATTCT GTCGGCAACT
TACGTCATCG GCCAAATCAT GGCGCAGTTT ATTACCAGCG CCTCCGGTCT GGGTATGTTG
CTGATGGTCA CCTTATTTCC GACGCTGGTG AGTCTGGGAG TAAGTCGTCT CTCTGCGGTG
GCGGTTATCG CAACCACCAT GTCCATTGAG TGGGGGATTC TGGAAACGAA CTCCATTTTT
GCTGCCCAGG TCGCAGGAAT GAAAATTGCC ACTTACTTCT TCCACTACCA GCTTCCGGTC
GCCTCTTGCG TCATTATCTC GGTGGCGATC TCCCACTTTT TCGTGCAACG CGCTTTCGAC
AAAAAAGATA AACATATCAA TCACGAACAG GCAGAGCAAA AAGCTCTCGA TAATGTCCCG
CCGCTCTATT ACGCCATTTT ACCGGTGATG CCGTTAATCC TGATGCTCGG CTCGCTGTTC
CTTGCCCACG TCGGGCTGAT GCAGTCAGAA CTGCATCTGG TGGTGGTGAT GTTACTGAGT
TTGACGGTGA CGATGTTTGT TGAGTTCTTC CGCAAGCATA ACTTGCGCGA AACAATGGAC
GATGTGCAGG CGTTTTTTGA CGGCATGGGT ACGCAGTTTG CCAACGTGGT AACGCTGGTG
GTCGCGGGTG AAATATTTGC GAAAGGCTTA ACGACGATTG GCACTGTCGA TGCGGTTATC
AGGGGGGCGG AGCATTCTGG TCTGGGCGGT ATTGGCGTGA TGATTATTAT GGCGCTGGTC
ATTGCCATTT GTGCCATTGT GATGGGCTCA GGCAATGCGC CGTTTATGTC ATTTGCCAGT
CTTATTCCGA ATATCGCAGC CGGACTACAT GTACCAGCGG TTGTAATGAT TATGCCAATG
CATTTTGCCA CGACGCTAGC GCGCGCTGTT TCGCCGATTA CTGCGGTGGT GGTCGTTACG
TCAGGAATTG CAGGCGTTTC GCCTTTTGCG GTAGTGAAGC GGACAGCGAT CCCCATGGCA
GTCGGTTTCG TGGTGAATAT GATTGCCACT ATCACGCTAT TTTATTAA
|
|---|
| Protein sequence | MFGIIISVIV LITMGYLILK NYKPQVVLAA AGIFLMMCGV WLGFGGVLDP AKSSGYLIVD
IYNEILRMLS NRIAGLGLSI MAVGGYARYM ERIGASRAMV SLLSRPLKLI RSPYIILSAT
YVIGQIMAQF ITSASGLGML LMVTLFPTLV SLGVSRLSAV AVIATTMSIE WGILETNSIF
AAQVAGMKIA TYFFHYQLPV ASCVIISVAI SHFFVQRAFD KKDKHINHEQ AEQKALDNVP
PLYYAILPVM PLILMLGSLF LAHVGLMQSE LHLVVVMLLS LTVTMFVEFF RKHNLRETMD
DVQAFFDGMG TQFANVVTLV VAGEIFAKGL TTIGTVDAVI RGAEHSGLGG IGVMIIMALV
IAICAIVMGS GNAPFMSFAS LIPNIAAGLH VPAVVMIMPM HFATTLARAV SPITAVVVVT
SGIAGVSPFA VVKRTAIPMA VGFVVNMIAT ITLFY
|
|---|
| |