| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3508 |
|---|
| Symbol | gltB |
|---|
| ID | 6147340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 3581244 |
|---|
| End bp | 3585797 |
|---|
| Gene Length | 4554 bp |
|---|
| Protein Length | 1517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641618337 |
|---|
| Product | glutamate synthase subunit alpha |
|---|
| Protein accession | YP_001745484 |
|---|
| Protein GI | 170682676 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0069] Glutamate synthase domain 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGCA AACCCCGTCG CCACGCTCTT TCTGTGCCCG TGCGCAGCGG TTCGGAAGTG
GGGTTCCCGC AGAGCCTGGG GGAGGTTCAC GATATGTTGT ACGATAAATC CCTTGAGAGG
GATAACTGTG GTTTCGGCCT GATCGCCCAC ATAGAAGGCG AACCTAGCCA CAAGGTAGTG
CGTACTGCAA TACACGCACT GGCCCGCATG CAGCACCGTG GCGCGATTCT CGCCGATGGT
AAAACCGGTG ACGGTTGCGG CTTGCTGTTA CAAAAACCGG ATCGCTTTTT TCGCATCGTT
GCGCAGGAGC GCGGCTGGCG TTTAGCAAAA AACTACGCTG TCGGGATGCT CTTCCTGAAT
AAAGATCCTG AACTCGCCGC TGCCGCACGC CGCATCGTTG AAGAAGAGCT GCAACGCGAA
ACATTGTCGA TTGTGGGCTG GCGTGATGTC CCCACTAACG AAGGCGTGCT GGGTGAAATC
GCCCTCTCCT CTCTGCCACG CATTGAGCAA ATTTTTGTGA ACGCCCCGGC AGGCTGGCGT
CCACGCGATA TGGAGCGCCG TCTGTTTATC GCCCGCCGCC GCATTGAAAA GCGTCTCGAA
GCCGACAAAG ACTTCTACGT CTGTAGCCTG TCGAATCTGG TGAACATCTA TAAAGGTCTG
TGTATGCCGG CGGATCTGCC GCGCTTTTAT CTGGATCTTG CGGACCTGCG TCTGGAATCG
GCCATTTGCC TGTTCCACCA GCGCTTTTCC ACTAACACCG TACCGCGCTG GCCGCTGGCA
CAGCCGTTCC GCTACCTCGC GCATAACGGT GAAATCAACA CCATCACTGG TAACCGCCAA
TGGGCGCGTG CGCGTACCTA TAAATTCCAG ACGCCGCTGA TCCCTGACCT GCACGACGCC
GCGCCGTTCG TCAACGAAAC CGGCTCTGAC TCCAGTTCCA TGGATAACAT GCTGGAACTG
CTGCTGGCAG GCGGGATGGA TATCATCCGC GCCATGCGTC TGTTAGTGCC ACCCGCCTGG
CAGAACAACC CGGATATGGA CCCGGAACTG CGTGCCTTCT TTGACTTTAA CTCCATGCAT
ATGGAGCCGT GGGATGGCCC GGCAGGCATC GTGATGTCTG ACGGTCGTTT TGCCGCCTGT
AACCTCGACC GTAACGGTCT GCGTCCGGCA CGCTATGTCA TCACCAAAGA TAAGCTCATT
ACCTGCGCCT CTGAAGTCGG TATCTGGGAT TATCAGCCTG ACGAAGTGGT CGAAAAAGGC
CGCGTGGGGC CAGGCGAACT GATGGTGATC GACACCCGCA GTGGGCGTAT TCTGCACTCG
GCAGAAACCG ATGACGATCT GAAAAGCCGC CACCCTTATA AAGAGTGGAT GGAGAAAAAC
GTCCGCCGTC TGGTACCGTT TGAAGATCTG CCCGATGAAG AAGTGGGTAG CCGCGAACTG
GACGACGACA CGCTTGCCAG CTACCAGAAA CAATTTAACT ACAGCGCGGA AGAGCTGGAT
TCGGTGATCC GCGTACTGGG TGAAAACGGT CAGGAAGCGG TCGGTTCGAT GGGCGACGAC
ACCCCATTCG CCGTGCTCTC CAGTCAGCCG CGCATTATTT ACGACTACTT CCGCCAGCAA
TTTGCCCAGG TGACTAACCC GCCAATCGAC CCGCTGCGTG AAGCGCATGT TATGTCGCTC
GCCACCAGCA TTGGCCGCGA AATGAACGTC TTCTGCGAAG CAGAAGGCCA GGCGCACCGT
TTAAGCTTTA AATCGCCGAT TCTGCTCTAT TCCGATTTCA AACAGCTCAC GACGATGAAA
GAGGATCACT ACCGCGCAGA TACGCTGGAT ATCACCTTTG ACGTCACTAA AACCACGCTC
GAAGCGACGG TGAAAGAACT GTGCGACAAA GCCGAAAAAA TGGTACGTAG CGGCACCGTA
CTGCTGGTGC TCTCCGACCG GAATATCGCT AAAGATCGCC TGCCGGTTCC GGCTCCGATG
GCGGTTGGCG CGATCCAGAC CCGTCTGGTC GATCAAAGCC TGCGTTGCGA TGCCAACATC
ATCGTCGAAA CCGCCAGCGC CCGTGATCCG CACCACTTCG CCGTGTTGCT GGGTTTCGGC
GCGACGGCTA TTTATCCGTA CCTTGCCTAT GAAACGCTGG GCCGTCTGGT AGACACCCAC
GCGATTGCCA AAGATTATCG TACCGTGATG CTCAACTATC GTAACGGCAT CAACAAAGGC
TTGTACAAAA TCATGTCCAA AATGGGCATC TCCACCATCG CCTCTTACCG CTGCTCGAAA
CTGTTTGAAG CGGTCGGTCT GCACGATGAT GTCGTGGGCC TGTGCTTCCA GGGGGCGGTT
AGCCGCATTG GGGGGGCTAG CTTTGAAGAC TTCCAGCAGG ATCTGCTGAA TCTGTCGAAA
CGTGCCTGGC TGGCGCGTAA GCCCATCAGC CAGGGCGGCC TGCTGAAATA CGTGCACGGC
GGCGAATACC ACGCCTACAA CCCGGACGTG GTGCGCACGC TGCAACAGGC GGTACAGAGC
GGCGAGTATA GCGACTATCA GGAATACGCG AAGCTGGTTA ATGAGCGTCC GGCAACCACG
CTGCGCGATC TGCTGGCAAT TACGCCGGGT GAAAACGCAG TCAACATTGC CGATGTTGAA
CCGGCAAGCG AACTGTTTAA ACGCTTCGAT ACCGCCGCGA TGTCTATCGG CGCGTTAAGC
CCGGAAGCCC ACGAGGCGCT GGCGGAAGCG ATGAACAGCA TCGGCGGTAA CTCAAACTCC
GGCGAAGGCG GTGAAGACCC GGCGCGCTAT GGCACTAACA AAGTGTCGCG CATCAAGCAG
GTGGCGTCCG GTCGCTTCGG CGTTACTCCG GCGTACCTGG TCAATGCCGA CGTCATTCAG
ATAAAAGTCG CCCAGGGCGC GAAGCCGGGT GAAGGTGGTC AGTTACCGGG TGATAAAGTC
ACTCCTTACA TTGCCAAACT GCGCTATTCG GTGCCGGGCG TGACGCTGAT CTCCCCGCCG
CCGCACCACG ATATCTACTC TATTGAGGAT TTAGCGCAGC TGATTTTCGA CCTCAAGCAG
GTCAATCCAA AAGCGATGAT CTCCGTGAAG CTGGTTTCCG AACCGGGCGT AGGCACCATC
GCGACTGGCG TGGCAAAAGC TTATGCCGAT TTAATCACCA TCGCAGGCTA TGACGGCGGC
ACCGGCGCAA GTCCGCTTTC ATCGGTGAAA TACGCAGGCT GTCCGTGGGA GCTGGGGCTT
GTTGAAACCC AACAGGCGCT GGTTGCCAAC GGCTTGCGTC ACAAGATCCG TTTGCAGGTT
GATGGCGGCC TGAAAACCGG CGTTGATATC ATCAAAGCGG CGATTCTCGG CGCAGAAAGC
TTCGGCTTCG GCACTGGCCC GATGGTAGCG CTTGGCTGTA AATATCTGCG AATTTGCCAC
CTGAACAACT GCGCCACGGG TGTAGCAACT CAGGATGACA AACTGCGTAA GAATCACTAT
CACGGCCTGC CGTTCAAAGT GACTAATTAC TTTGAGTTTA TCGCCCGTGA AACCCGCGAG
CTGATGGCAC AGCTGGGGGT AACGCGTCTG GTGGATCTGA TTGGTCGCAC CGACCTGCTG
AAAGAGCTGG ACGGTTTCAC CGCCAAACAG CAGAAACTGG CGCTGTCGAA GCTGCTGGAA
ACTGCCGAGC CAAATGCAGG TAAGGCACTC TACTGCACCG AAAACAACCC GCCGTTTGAT
AACGGCCTAC TGAACGCGCA GTTGCTGCAA CAGGCAAAAC CGTTTGTCGA TGAACGCCAG
AGCAAAACCT TCTGGTTCGA TATCCGCAAC ACCGATCGTT CTGTCGGCGC GTCGCTTTCA
GGCTATATCG CCCAGACGCA CGGCGATCAG GGGCTGGCTG CCGATCCGAT CAAAGCATAC
TTCAACGGCA CCGCAGGCCA GAGCTTCGGT GTGTGGAACG CGGGCGGCGT GGAACTGTAT
CTGACCGGCG ATGCTAACGA CTATGTCGGT AAAGGCATGG CGGGCGGCTT AATTGCCATT
CGTCCTCCGG TTGGCTCAGC CTTCCGCAGC CATGAAGCAA GCATTATCGG CAACACCTGC
CTGTATGGCG CGACCGGAGG TCGTCTGTAT GCCGCAGGCC GCGCGGGTGA ACGTTTCGGC
GTACGTAACT CCGGTGCTAT CACCGTGGTA GAAGGCATTG GCGACAACGG CTGTGAATAT
ATGACGGGCG GTATTGTCTG TATTCTGGGT AAAACCGGCG TTAACTTCGG CGCGGGCATG
ACCGGTGGCT TCGCTTACGT TCTCGATGAA AGCGGCGATT TCCGCAAACG CGTTAACCCG
GAACTGGTCG AGGTCTTAAG CGTTGACGAT TTGGCGATCC ATGAAGAGCA TCTGCGTGGT
CTTATCACCG AGCATGTGCA GCATACCGGT TCCCAGCGCG GTGAAGAGAT TCTGGCGAAC
TGGTCAACCT TCGCCACGAA ATTCGCGCTG GTTAAACCGA AGTCCAGTGA TGTAAAAGCA
CTGCTGGGTC ACCGTAGTCG TAGCGCAGCA GAGTTGCGCG TGCAGGCGCA GTAA
|
|---|
| Protein sequence | MTRKPRRHAL SVPVRSGSEV GFPQSLGEVH DMLYDKSLER DNCGFGLIAH IEGEPSHKVV
RTAIHALARM QHRGAILADG KTGDGCGLLL QKPDRFFRIV AQERGWRLAK NYAVGMLFLN
KDPELAAAAR RIVEEELQRE TLSIVGWRDV PTNEGVLGEI ALSSLPRIEQ IFVNAPAGWR
PRDMERRLFI ARRRIEKRLE ADKDFYVCSL SNLVNIYKGL CMPADLPRFY LDLADLRLES
AICLFHQRFS TNTVPRWPLA QPFRYLAHNG EINTITGNRQ WARARTYKFQ TPLIPDLHDA
APFVNETGSD SSSMDNMLEL LLAGGMDIIR AMRLLVPPAW QNNPDMDPEL RAFFDFNSMH
MEPWDGPAGI VMSDGRFAAC NLDRNGLRPA RYVITKDKLI TCASEVGIWD YQPDEVVEKG
RVGPGELMVI DTRSGRILHS AETDDDLKSR HPYKEWMEKN VRRLVPFEDL PDEEVGSREL
DDDTLASYQK QFNYSAEELD SVIRVLGENG QEAVGSMGDD TPFAVLSSQP RIIYDYFRQQ
FAQVTNPPID PLREAHVMSL ATSIGREMNV FCEAEGQAHR LSFKSPILLY SDFKQLTTMK
EDHYRADTLD ITFDVTKTTL EATVKELCDK AEKMVRSGTV LLVLSDRNIA KDRLPVPAPM
AVGAIQTRLV DQSLRCDANI IVETASARDP HHFAVLLGFG ATAIYPYLAY ETLGRLVDTH
AIAKDYRTVM LNYRNGINKG LYKIMSKMGI STIASYRCSK LFEAVGLHDD VVGLCFQGAV
SRIGGASFED FQQDLLNLSK RAWLARKPIS QGGLLKYVHG GEYHAYNPDV VRTLQQAVQS
GEYSDYQEYA KLVNERPATT LRDLLAITPG ENAVNIADVE PASELFKRFD TAAMSIGALS
PEAHEALAEA MNSIGGNSNS GEGGEDPARY GTNKVSRIKQ VASGRFGVTP AYLVNADVIQ
IKVAQGAKPG EGGQLPGDKV TPYIAKLRYS VPGVTLISPP PHHDIYSIED LAQLIFDLKQ
VNPKAMISVK LVSEPGVGTI ATGVAKAYAD LITIAGYDGG TGASPLSSVK YAGCPWELGL
VETQQALVAN GLRHKIRLQV DGGLKTGVDI IKAAILGAES FGFGTGPMVA LGCKYLRICH
LNNCATGVAT QDDKLRKNHY HGLPFKVTNY FEFIARETRE LMAQLGVTRL VDLIGRTDLL
KELDGFTAKQ QKLALSKLLE TAEPNAGKAL YCTENNPPFD NGLLNAQLLQ QAKPFVDERQ
SKTFWFDIRN TDRSVGASLS GYIAQTHGDQ GLAADPIKAY FNGTAGQSFG VWNAGGVELY
LTGDANDYVG KGMAGGLIAI RPPVGSAFRS HEASIIGNTC LYGATGGRLY AAGRAGERFG
VRNSGAITVV EGIGDNGCEY MTGGIVCILG KTGVNFGAGM TGGFAYVLDE SGDFRKRVNP
ELVEVLSVDD LAIHEEHLRG LITEHVQHTG SQRGEEILAN WSTFATKFAL VKPKSSDVKA
LLGHRSRSAA ELRVQAQ
|
|---|
| |