| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3498 |
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| Symbol | rpoN |
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| ID | 6144563 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3571330 |
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| End bp | 3572763 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641618327 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001745474 |
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| Protein GI | 170684031 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCAAG GTTTGCAACT CAGGCTTAGC CAACAACTGG CGATGACGCC ACAGCTCCAA
CAGGCAATTC GTCTGTTGCA GTTGTCGACG CTGGAACTTC AGCAGGAGCT ACAGCAGGCG
CTGGAGAGTA ATCCGCTGCT TGAGCAAATC GACACTCATG AAGAAATCGA CACCCGCGAA
ACGCAAGACA GTGAAACGCT GGACACCGCC GACGCGCTCG AACAAAAAGA GATGCCGGAA
GAGCTGCCGC TCGATGCCAG TTGGGACACC ATTTACACCG CTGGTACACC ATCCGGCACC
AGCGGTGACT ACATTGACGA CGAGCTGCCG GTCTATCAGG GCGAAACGAC GCAGACCTTG
CAGGATTACC TGATGTGGCA GGTCGAGCTG ACACCGTTTT CCGACACTGA CCGCGCTATT
GCTACCTCTA TCGTCGATGC CGTTGATGAC ACCGGTTATC TGACTGTCCC GCTGGAAGAT
ATTCTCGAAA GTATGGGCGA TGAAGAGATT GACATCGACG AAGTTGAAGC CGTCCTTAAG
CGGATCCAAC GGTTTGATCC AGTCGGTGTG GCGGCAAAAG ATCTGCGTGA CTGTCTGCTG
ATCCAACTCT CCCAATTCGA TAAAACCACG CCGTGGCTGG AAGAGGCCAG ACTGATTATT
AGCGATCATC TCGATCTGTT AGCCAATCAC GACTTCCGCA CTTTAATGCG CGTCACGCGT
CTGAAAGAAG ATGTGCTGAA AGAAGCCGTC AATCTGATCC AGTCGCTCGA TCCGCGCCCC
GGGCAGTCGA TCCAGACTGG CGAACCTGAG TATGTCATTC CAGATGTGCT GGTGCGTAAG
CATAACGGTC ACTGGACGGT AGAACTCAAC AGTGACAGCA TTCCGCGTCT GCAAATCAAC
CAGCACTACG CCTCGATGTG CAATAACGCG CGCAACGATG GTGACAGCCA GTTTATCCGC
AGCAATCTGC AGGATGCCAA ATGGTTGATC AAGAGTCTGG AAAGCCGTAA CGATACGCTA
CTGCGCGTGA GTCGCTGTAT CGTTGAACAG CAGCAGGCCT TCTTTGAGCA AGGTGAAGAA
TATATGAAAC CGATGGTACT GGCCGATATC GCCCAGGCTG TCGAAATGCA TGAATCGACG
ATATCTCGCG TGACCACGCA AAAATACCTG CATAGTCCAC GAGGCATTTT TGAACTGAAG
TATTTCTTTT CCAGTCACGT CAATACCGAG GGCGGCGGCG AAGCTTCCTC CACGGCGATT
CGTGCGCTGG TGAAGAAATT AATCGCGGCG GAAAACCCAG CGAAACCGTT GAGCGACAGC
AAGTTAACCT CTTTGCTGTC GGAACAAGGT ATCATGGTGG CACGCCGCAC TGTTGCGAAG
TACCGAGAGT CTTTATCCAT TCCGCCGTCA AACCAGCGTA AACAGCTCGT TTGA
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| Protein sequence | MKQGLQLRLS QQLAMTPQLQ QAIRLLQLST LELQQELQQA LESNPLLEQI DTHEEIDTRE
TQDSETLDTA DALEQKEMPE ELPLDASWDT IYTAGTPSGT SGDYIDDELP VYQGETTQTL
QDYLMWQVEL TPFSDTDRAI ATSIVDAVDD TGYLTVPLED ILESMGDEEI DIDEVEAVLK
RIQRFDPVGV AAKDLRDCLL IQLSQFDKTT PWLEEARLII SDHLDLLANH DFRTLMRVTR
LKEDVLKEAV NLIQSLDPRP GQSIQTGEPE YVIPDVLVRK HNGHWTVELN SDSIPRLQIN
QHYASMCNNA RNDGDSQFIR SNLQDAKWLI KSLESRNDTL LRVSRCIVEQ QQAFFEQGEE
YMKPMVLADI AQAVEMHEST ISRVTTQKYL HSPRGIFELK YFFSSHVNTE GGGEASSTAI
RALVKKLIAA ENPAKPLSDS KLTSLLSEQG IMVARRTVAK YRESLSIPPS NQRKQLV
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