Gene EcSMS35_3483 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_3483 
SymbolispB 
ID6143339 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp3560322 
End bp3561293 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content53% 
IMG OID641618312 
Productoctaprenyl diphosphate synthase 
Protein accessionYP_001745459 
Protein GI170683435 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0142] Geranylgeranyl pyrophosphate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000324786 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTTAG AAAAAATCAA TGAGTTAACC GCGCAAGATA TGGCGGGTGT TAATGCGGCA 
ATCCTTGAGC AGCTTAATTC CGACGTCCAA CTGATCAATC AGTTAGGCTA TTACATCGTC
AGCGGCGGCG GTAAACGTAT TCGTCCGATG ATTGCTGTAC TGGCTGCACG AGCTGTTGGC
TATGAGGGAA ATGCGCATGT CACCATTGCT GCCCTGATCG AGTTTATCCA CACGGCGACT
CTGCTGCACG ACGACGTTGT GGATGAATCA GATATGCGCA GGGGTAAAGC TACCGCCAAC
GCCGCATTTG GCAATGCCGC CAGCGTGCTG GTAGGCGATT TTATTTATAC CCGCGCGTTC
CAGATGATGA CCAGCCTCGG CTCGCTCAAA GTGCTGGAAG TCATGTCAGA AGCCGTAAAC
GTCATCGCAG AAGGTGAAGT TCTGCAACTG ATGAACGTTA ACGATCCGGA CATCACTGAA
GAAAACTACA TGCGCGTTAT CTATAGCAAA ACCGCGCGTC TGTTTGAGGC TGCCGCGCAG
TGTTCCGGGA TTCTGGCTGG CTGTACGCCG GAGGAGGAGA AAGGCCTGCA GGATTATGGG
CGCTATCTCG GCACTGCTTT CCAGTTGATC GACGATTTAC TCGATTACAA TGCCGATGGC
GAACAGTTAG GTAAAAACAT CGGCGACGAT CTGAACGAAG GTAAACCGAC GCTGCCGCTG
CTGCATGCAA TGCATCATGG CACACCAGAA CAGGCACAGA TGATTCGTAC CGCCATCGAA
CAGGGTAACG GTCGCCATCT TCTGGAACCG GTTCTGGAAG CAATGAACGC TTGTGGATCT
CTTGAATGGA CGCGTCAGCG TGCCGAGGAA GAAGCAGACA AAGCCATCGC AGCGTTACAG
GTGCTCCCGG ACACCCCGTG GCGAGAAGCA CTCATCGGCC TCGCGCACAT CGCTGTTCAA
CGCGATCGTT AA
 
Protein sequence
MNLEKINELT AQDMAGVNAA ILEQLNSDVQ LINQLGYYIV SGGGKRIRPM IAVLAARAVG 
YEGNAHVTIA ALIEFIHTAT LLHDDVVDES DMRRGKATAN AAFGNAASVL VGDFIYTRAF
QMMTSLGSLK VLEVMSEAVN VIAEGEVLQL MNVNDPDITE ENYMRVIYSK TARLFEAAAQ
CSGILAGCTP EEEKGLQDYG RYLGTAFQLI DDLLDYNADG EQLGKNIGDD LNEGKPTLPL
LHAMHHGTPE QAQMIRTAIE QGNGRHLLEP VLEAMNACGS LEWTRQRAEE EADKAIAALQ
VLPDTPWREA LIGLAHIAVQ RDR