Gene EcSMS35_3360 details

Gene Information

• Locus tag: EcSMS35_3360
• Symbol: rpoD
• ID: 6145062
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli SMS-3-5
• Kingdom: Bacteria
• Replicon accession: NC_010498
• Strand: +
• Start bp: 3438565
• End bp: 3440406
• Gene Length: 1842 bp
• Protein Length: 613 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 641618189
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_001745339
• Protein GI: 170683578
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.0343174
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 62
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGAGCAAA ACCCGCAGTC ACAGCTGAAA CTTCTTGTCA CCCGTGGTAA GGAGCAAGGC 
TATCTGACCT ATGCCGAGGT CAATGACCAT CTGCCGGAAG ATATCGTCGA TTCAGATCAG 
ATCGAAGACA TCATCCAAAT GATCAACGAC ATGGGCATTC AGGTGATGGA AGAAGCACCG 
GATGCCGATG ATCTGATGCT GGCTGAAAAC ACCGCGGACG AAGATGCTGC CGAAGCCGCC 
GCGCAGGTGC TTTCCAGCGT GGAATCTGAA ATCGGGCGCA CGACTGACCC GGTACGCATG 
TACATGCGTG AAATGGGCAC CGTTGAACTG TTGACCCGCG AAGGCGAAAT TGACATCGCT 
AAGCGTATTG AAGACGGGAT CAACCAGGTT CAATGCTCCG TTGCTGAATA TCCGGAAGCG 
ATCACCTATC TGCTGGAACA GTACGATCGT GTTGAAGCAG AAGAAGCGCG TCTGTCCGAT 
CTGATCACCG GCTTTGTTGA CCCGAACGCA GAAGAAGATC TGGCACCTAC CGCCACTCAC 
GTCGGTTCTG AGCTTTCCCA GGAAGATCTG GACGATGACG AAGATGAAGA CGAAGAAGAT 
GGCGATGACG ACAGCGCCGA TGATGACAAC AGCATCGACC CGGAACTGGC TCGCGAAAAA 
TTTGCGGAAC TGCGCGCTCA GTACGTTGTA ACGCGTGACA CCATCAAAGC GAAAGGTCGC 
AGTCACGCTG CTGCTCAGGA AGAGATCCTG AAACTGTCTG AAGTATTTAA ACAGTTCCGC 
CTGGTGCCGA AGCAGTTTGA CTACCTGGTC AACAGCATGC GCGTCATGAT GGACCGCGTT 
CGTACGCAAG AACGTCTGAT CATGAAGCTC TGCGTTGAGC AGTGCAAAAT GCCGAAGAAA 
AACTTCATTA CCCTGTTTAC CGGCAACGAA ACCAGCGATA CCTGGTTCAA CGCGGCAATT 
GCGATGAACA AGCCGTGGTC GGAAAAACTG CACGATGTCT CTGAAGAAGT GCATCGCGCC 
CTGCAGAAAC TGCAGCAGAT TGAAGAAGAA ACCGGCCTGA CCATCGAGCA GGTTAAAGAT 
ATCAACCGTC GTATGTCCAT CGGTGAAGCA AAAGCCCGCC GTGCGAAGAA AGAGATGGTT 
GAAGCGAACT TACGTCTGGT TATTTCTATC GCCAAGAAAT ACACCAACCG TGGCTTGCAG 
TTCCTTGACC TGATTCAGGA AGGTAACATC GGCCTGATGA AAGCGGTTGA TAAATTCGAA 
TACCGCCGTG GTTACAAGTT CTCCACCTAC GCAACCTGGT GGATCCGTCA GGCGATCACC 
CGTTCTATCG CGGATCAGGC GCGCACCATC CGTATTCCGG TGCATATGAT TGAGACTATC 
AACAAACTCA ACCGTATTTC TCGCCAGATG CTGCAAGAGA TGGGCCGTGA ACCGACGCCG 
GAAGAACTGG CTGAACGTAT GCTGATGCCG GAAGACAAGA TCCGCAAAGT GCTGAAGATC 
GCCAAAGAGC CAATCTCCAT GGAAACGCCG ATCGGTGATG ATGAAGATTC GCATCTGGGG 
GATTTCATCG AGGATACCAC CCTCGAGCTG CCGCTGGATT CTGCGACCAC CGAAAGCCTG 
CGTGCGGCAA CGCACGACGT GCTGGCTGGC CTGACCGCGC GTGAAGCGAA AGTTCTGCGT 
ATGCGTTTCG GTATCGATAT GAACACCGAC CACACGCTGG AAGAAGTGGG TAAACAGTTC 
GACGTTACCC GCGAACGTAT CCGTCAGATC GAAGCGAAGG CGCTGCGCAA ACTGCGTCAC 
CCGAGCCGTT CTGAAGTGCT GCGTAGCTTC CTGGACGATT AA 

 

Protein sequence

MEQNPQSQLK LLVTRGKEQG YLTYAEVNDH LPEDIVDSDQ IEDIIQMIND MGIQVMEEAP 
DADDLMLAEN TADEDAAEAA AQVLSSVESE IGRTTDPVRM YMREMGTVEL LTREGEIDIA 
KRIEDGINQV QCSVAEYPEA ITYLLEQYDR VEAEEARLSD LITGFVDPNA EEDLAPTATH 
VGSELSQEDL DDDEDEDEED GDDDSADDDN SIDPELAREK FAELRAQYVV TRDTIKAKGR 
SHAAAQEEIL KLSEVFKQFR LVPKQFDYLV NSMRVMMDRV RTQERLIMKL CVEQCKMPKK 
NFITLFTGNE TSDTWFNAAI AMNKPWSEKL HDVSEEVHRA LQKLQQIEEE TGLTIEQVKD 
INRRMSIGEA KARRAKKEMV EANLRLVISI AKKYTNRGLQ FLDLIQEGNI GLMKAVDKFE 
YRRGYKFSTY ATWWIRQAIT RSIADQARTI RIPVHMIETI NKLNRISRQM LQEMGREPTP 
EELAERMLMP EDKIRKVLKI AKEPISMETP IGDDEDSHLG DFIEDTTLEL PLDSATTESL 
RAATHDVLAG LTAREAKVLR MRFGIDMNTD HTLEEVGKQF DVTRERIRQI EAKALRKLRH 
PSRSEVLRSF LDD