| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3355 |
|---|
| Symbol | ttdB |
|---|
| ID | 6147318 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 3432889 |
|---|
| End bp | 3433494 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641618184 |
|---|
| Product | L(+)-tartrate dehydratase subunit beta |
|---|
| Protein accession | YP_001745334 |
|---|
| Protein GI | 170683420 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain |
|---|
| TIGRFAM ID | [TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.268744 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA TCCTGACAAC CCCGATCAAA GCTGAAGATC TGCAAGATAT TCGCGTCGGC
GATGTGATCT ACCTGACCGG TACGCTGGTG ACCTGCCGTG ACGTTTGTCA CCGTCGCTTG
ATCGAACTCA AACGTCCGAT CCCTTACGAT CTCAACGGCA AAGCGATTTT CCACGCTGGC
CCCATCGTGC GCAAAAACGG CGACAAATGG GAGATGGTAT CCGTCGGCCC GACAACCAGT
ATGCGTATGG AAAGTTTTGA ATGTGAATTT ATCGAACAGA CCGGCGTGAA ACTGGTGGTC
GGCAAAGGCG GAATGGGGCC GCTGACCGAA GAAGGCTGCC AGAAATTCAA GGCGCTACAT
GTGATTTTCC CGGCAGGCTG CGCAGTACTG GCGGCAACCC AGGTGGAAGA GATTGAAGAA
GTGCACTGGA CAGAACTCGG GATGCCGGAG TCACTGTGGG TCTGCCGGGT CAAAGAGTTC
GGCCCGCTGA TTGTCTCTAT TGATACCCAC GGCAACAACC TGATAGCCGA AAACAAAAAG
CTGTTCGCCG AACGCCGCGA TCCCATCGTG GAAGAGATCT GCGAGCACGT CCATTACATC
AAATAA
|
|---|
| Protein sequence | MKKILTTPIK AEDLQDIRVG DVIYLTGTLV TCRDVCHRRL IELKRPIPYD LNGKAIFHAG
PIVRKNGDKW EMVSVGPTTS MRMESFECEF IEQTGVKLVV GKGGMGPLTE EGCQKFKALH
VIFPAGCAVL AATQVEEIEE VHWTELGMPE SLWVCRVKEF GPLIVSIDTH GNNLIAENKK
LFAERRDPIV EEICEHVHYI K
|
|---|
| |