| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3245 |
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| Symbol | gspF |
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| ID | 6145182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 3315401 |
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| End bp | 3316624 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641618075 |
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| Product | general secretion pathway protein GspF |
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| Protein accession | YP_001745225 |
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| Protein GI | 170681469 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 0.750263 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACTGT TTTACTATCA GGCGCTGGAG CGTAATGGTC GCAAAACCAA AGGCATGATT
GAGGCGGATT CCGCGCGTCA TGCCCGTCAA TTGTTACGCG GTAAAGACCT CATTCCCGTG
CACATTGAAG CCCGGATGAA TGCATCGGCA GGGGGAATGT TGCAGCGTCG GCGGCACGCA
CATCGTCGCG TGGCGGCGGC AGATCTGGCG CTGTTCACTC GTCAACTGGC AACGCTGGTG
CAGGCAGCAA TGCCGCTGGA AACCTGCTTA CAGGCGGTCA GTGAGCAAAG CGAAAAACTG
CATGTAAAAA GCCTCGGAAT GGCGCTGCGC AGCCGGATTC AGGAAGGTTA TACCCTGTCG
GACAGCCTGC GCGAACATCC CCGCGTCTTT GACTCCCTGT TTTGTTCGAT GGTCGCCGCC
GGAGAAAAAT CCGGGCATCT CGACGTGGTG CTCAATCGCC TGGCGGATTA CACCGAACAG
CGGCAGCGTC TGAAATCACG CCTGCTGCAG GCCATGCTCT ATCCGCTGGT TCTGCTGGTG
GTGGCAACGG GCGTAGTCAC TATTTTGCTG ACGGCAGTGG TGCCGAAAAT TATCGAACAG
TTTGATCATC TCGGACACGC GCTACCCGCC TCCACCCGAA TGCTCATCGC TATGAGCGAC
GCGTTACAGG CCAGCGGCGT GTACTGGCTG GCGGGTTTGC TGGGGCTTCT GGTGCTGGGG
CAACGGTTAC TCAAAAATCC TGCGATGCGC CTGCGCTGGG ATAAAACCTT GCTGCGCCTG
CCCGTGACGG GGCGTGTTGC GCGCGGACTG AATACGGCGC GTTTTTCCCG CACGTTAAGC
ATCCTCACCG CCAGCAGTGT TCCGCTGCTG GAAGGCATTC AGACCGCCGC CGCCGTGTCG
GCAAATCGTT ATGTCGAGCA ACAACTGCTG CTGGCGGCAG ATCGCGTCCG CGAAGGAAGC
AGCCTGCGCG CCGCGCTGGC GGATCTGCGC CTGTTCCCGC CGATGATGCT GTACATGATC
GCCTCCGGCG AACAGAGCGG CGAGCTGGAA ACCATGCTTG AACAGGCCGC GATCAACCAG
GAACGGGAAT TTGATACCCA GGTGGGTCTG GCGTTAGGGC TGTTTGAGCC GGCGCTGGTG
GTGGTGATGG CGGGCGTGGT GCTGTTTATC GTCATCGCCA TCCTCGAACC GATGCTGCAA
CTGAACAATA TGGTTGGAAT GTAA
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| Protein sequence | MALFYYQALE RNGRKTKGMI EADSARHARQ LLRGKDLIPV HIEARMNASA GGMLQRRRHA
HRRVAAADLA LFTRQLATLV QAAMPLETCL QAVSEQSEKL HVKSLGMALR SRIQEGYTLS
DSLREHPRVF DSLFCSMVAA GEKSGHLDVV LNRLADYTEQ RQRLKSRLLQ AMLYPLVLLV
VATGVVTILL TAVVPKIIEQ FDHLGHALPA STRMLIAMSD ALQASGVYWL AGLLGLLVLG
QRLLKNPAMR LRWDKTLLRL PVTGRVARGL NTARFSRTLS ILTASSVPLL EGIQTAAAVS
ANRYVEQQLL LAADRVREGS SLRAALADLR LFPPMMLYMI ASGEQSGELE TMLEQAAINQ
EREFDTQVGL ALGLFEPALV VVMAGVVLFI VIAILEPMLQ LNNMVGM
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