| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3241 |
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| Symbol | gspJ |
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| ID | 6143491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 3313392 |
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| End bp | 3313997 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641618071 |
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| Product | general secretion pathway protein GspJ |
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| Protein accession | YP_001745221 |
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| Protein GI | 170679969 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.575634 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAGAAGGG CTCGCGCTGG TTTCACGTTA CTGGAAATGC TGGTGGCGAT AGCCATTTTT
GCCTCACTGG CACTGATGGC GCAGCAGGTG ACAAACGGCG TTACTCGCGT GAATAGCGCC
GTCGCCGGAC ACGATCAAAA ACTAAACCTC ATGCAGCAAA CGATGAGTTT TTTGAACCAC
GATCTGACAC AAATGATGCC GCGTCCGGTA AGAGGCGATC AGGGCCAGCG TGAACCAGCG
TTACTGGCGG GCGCTGGCGT GCTGGCGTCT GAGAGTGAAG GGATGCGTTT TGTACGTGGT
GGCGTGGTTA ATCCGTTGAT GCGTCTGCCG CGCAGTAATC TGCTCACCGT CGGTTACCGC
ATTCATGGTG GTTATCTCGA ACGGTTAGCC TGGCCACTGA CCGATGCGGC AGGCAGCGTG
AAGCCAACAA CGCAAAAATT AATCCCGGCG GATTCGCTCC GTTTGCAGTT CCACGACGGC
ACGCGCTGGC AGGAGAGCTG GTCATCAGTG CAGGCGATTC CTGTGGCAGT ACGCATAACC
CTGCATTCGC CGCAATGGGG CGAAATTGAA CGCATCTGGT TGTTACGCGG GCCGCAATTA
TCATGA
|
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| Protein sequence | MRRARAGFTL LEMLVAIAIF ASLALMAQQV TNGVTRVNSA VAGHDQKLNL MQQTMSFLNH
DLTQMMPRPV RGDQGQREPA LLAGAGVLAS ESEGMRFVRG GVVNPLMRLP RSNLLTVGYR
IHGGYLERLA WPLTDAAGSV KPTTQKLIPA DSLRLQFHDG TRWQESWSSV QAIPVAVRIT
LHSPQWGEIE RIWLLRGPQL S
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