| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3061 |
|---|
| Symbol | mscS |
|---|
| ID | 6144121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 3150776 |
|---|
| End bp | 3151651 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641617930 |
|---|
| Product | mechanosensitive channel MscS |
|---|
| Protein accession | YP_001745081 |
|---|
| Protein GI | 170682680 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.397816 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.219365 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGATT TGAATGTTGT CGATAGCATA AACGGCGCGG GAAGCTGGCT GGTGGCTAAC
CAGGCGCTGC TGCTAAGTTA TGCAGTAAAC ATCGTGGCGG CACTCGCGAT CATCATCGTT
GGTTTGATTA TCGCGCGGAT GATTTCCAAC GCGGTGAATC GCCTGATGAT CTCCCGTAAA
ATCGATGCCA CTGTTGCTGA TTTTCTTTCT GCGTTAGTCC GTTACGGAAT TATCGCCTTT
ACGCTAATCG CTGCACTGGG CCGCGTGGGT GTACAAACAG CGTCAGTCAT TGCTGTACTC
GGTGCCGCAG GCTTAGCGGT TGGTCTGGCT TTGCAGGGGT CACTGTCTAA CCTGGCCGCT
GGCGTGTTAC TTGTCATGTT CCGCCCGTTC CGTGCCGGAG AATATGTTGA CCTCGGCGGC
GTAGCCGGTA CTGTGCTGAG TGTGCAGATT TTCTCCACCA CCATGCGTAC TGCAGACGGT
AAAATTATCG TTATTCCGAA CGGTAAAATT ATTGCCGGAA ATATTATTAA CTTCTCCCGC
GAGCCAGTTC GCCGTAACGA ATTTATTATT GGCGTGGCGT ATGATTCCGA TATCGATCAG
GTTAAGCAGA TCCTGACCAA TATTATCCAG TCTGAAGATC GCATTTTGAA AGATCGCGAA
ATGACTGTGC GCCTGAATGA ACTTGGCGCA TCGTCGATTA ATTTCGTGGT CCGCGTCTGG
AGCAACAGCG GCGATCTGCA AAACGTGTAC TGGGATGTGC TGGAGCGTAT TAAACGTGAA
TTTGATGCCG CCGGTATCAG CTTCCCGTAC CCGCAAATGG ATGTGAACTT TAAGCGGGTG
AAAGAAAATA AAGAAAACGA AGCGGTAACT CGTTAA
|
|---|
| Protein sequence | MEDLNVVDSI NGAGSWLVAN QALLLSYAVN IVAALAIIIV GLIIARMISN AVNRLMISRK
IDATVADFLS ALVRYGIIAF TLIAALGRVG VQTASVIAVL GAAGLAVGLA LQGSLSNLAA
GVLLVMFRPF RAGEYVDLGG VAGTVLSVQI FSTTMRTADG KIIVIPNGKI IAGNIINFSR
EPVRRNEFII GVAYDSDIDQ VKQILTNIIQ SEDRILKDRE MTVRLNELGA SSINFVVRVW
SNSGDLQNVY WDVLERIKRE FDAAGISFPY PQMDVNFKRV KENKENEAVT R
|
|---|
| |