| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3053 |
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| Symbol | msm |
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| ID | 6143445 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3141616 |
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| End bp | 3143760 |
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| Gene Length | 2145 bp |
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| Protein Length | 714 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641617922 |
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| Product | methylmalonyl-CoA mutase |
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| Protein accession | YP_001745073 |
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| Protein GI | 170683251 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAACG TGCAGGAGTG GCAACAGCTT GCCAACAAGG AATTGAGCCG TCGGGAGAAA
ACTGTCGACT CGCTGGTTCA GCAAACCGCG GAAGGGATCG CCATCAAGCC GCTGTATACC
GAAGCCGATC TCGATAATCT GGAGGTGACA GGTACCCTTC CTGGTTTGCC CCCCTACGTT
CGTGGCCCGC GTGCCACTAT GTATACCGCC CAACCGTGGA CCATCCGTCA GTATGCTGGT
TTTTCAACAG CAAAAGAGTC CAACGCTTTT TATCGCCGTA ACCTGGCCGC CGGGCAAAAA
GGTCTTTCCG TTGCGTTTGA CCTTGCCACC CACCGAGGCT ACGACTCCGA TAACCCGCGC
GTGGCGGGCG ACGTCGGCAA AGCGGGCGTT GCTATCGACA CCGTGGAAGA TATGAAAGTC
CTGTTCGACC AGATCCCGCT GGATAAAATG TCGGTTTCGA TGACCATGAA TGGCGCAGTA
CTACCAGTAC TGGCGTTTTA TATTGTCGCC GCAGAAGAGC AAGGTGTTAC ACCCGATAAA
CTGACCGGCA CTATTCAAAA CGATATCCTC AAAGAGTATC TTTGCCGCAA CACCTATATT
TACCCGCCAA AACCGTCAAT GCGTATTATC GCAGACATCA TCGCCTGGTG TTCCGGCAAC
ATGCCGCGAT TTAATACCAT CAGTATCAGC GGTTACCATA TGGGTGAAGC GGGTGCCAAC
TGCGTGCAGC AGGTAGCATT TACGCTCGCT GATGGGATTG AGTACATCAA AGCAGCAATC
TCCGCCGGGC TGAAAATTGA TGACTTCGCT CCTCGCCTGT CGTTCTTCTT CGGCATTGGC
ATGGATCTGT TTATGAACGT CGCCATGTTG CGTGCGGCAC GTTATTTATG GAGCGAAGCG
GTCAGTGGAT TTGGCGCACA GGATCCGAAA TCACTGGCGC TGCGTACCCA CTGCCAGACC
TCAGGCTGGA GCCTGACTGA ACAGGATCCG TATAACAACG TTATCCGCAC CACCATTGAA
GCCCTGGCTG CAACGCTGGG CGGTACTCAG TCACTGCATA CCAACGCCTT TGATGAAGCG
CTTGGTTTGC CTACCGATTT CTCAGCACGC ATTGCCCGCA ATACCCAGAT CATCATTCAG
GAAGAATCAG AACTCTGCCG CACCGTCGAT CCACTGGCCG GATCCTATTA CGTTGAATCG
CTGACCGATC AAATCGTCAA ACAAGCCAGA GCCATTATCC AACAGATCGA CGAAGCCGGT
GGCATGGCGA AAGCGATCGA AGCAGGCCTG CCAAAACGAA TGATCGAAGA GGCCTCAGCG
CGCGAGCAGT CGCTGATCGA CCAGGGCAAG CGTGTCATCG TTGGTGTCAA CAAGTACAAA
CTGGATCACG AAGACGAAAC CGACGTCCTT GAGATCGACA ACGTGATGGT GCGTAACGAG
CAGATTGCTT CACTGGAACG CATTCGCGCC ACCCGTGATG ATGCTGCCGT AACCGCCACG
TTGAACGCCC TGACTCACGC CGCACAGCAT AACGAAAACC TGCTGGCTGC CGCTGTTAAT
GCCGCTCGCG TTCGCGCAAC GCTTGGTGAA ATTTCCGATG CGCTGGAAGC GGCATTTGAC
CGTTATCTGG TGCCAAGCCA GTGTGTTACC GGCGTGATTG CGCAAAGCTA TCATCAGTCT
GAGAAATCGG CCACCGAGTT CGATGCCATT GTTGCGCAAA CGGAGCAGTT CCTTGCCGAC
AATGGTCGTC GTCCGCGCAT TCTGATCGCC AAAATGGGCC AGGATGGGCA CGATCGCGGC
GCGAAAGTGA TCGCCAGCGC CTATTCCGAT CTCGGTTTCG ACGTAGATTT AAGCCCGATG
TTCTCTACAC CTGAAGAGAT CGCCCGCCTG GCAGTAGAAA ACGACGTTCA CGTAGTGGGC
GCATCTTCAC TGGCTGCCGG TCATAAGACG CTGATCCCGG AACTGGTCGA AGCGCTGAAA
AAATGGGGAC GCGAAGATAT CTGCGTGGTC GCGGGTGGCG TCATTCCACC GCAGGATTAC
GCCTTCCTGC AAGAGCGCGG CGTGGCGGCG ATTTATGGTC CAGGTACGCC TATGCTCGAC
AGCGTGCGCG ACGTACTGAA TCTAATAAGC CAGCATCATG ATTAA
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| Protein sequence | MSNVQEWQQL ANKELSRREK TVDSLVQQTA EGIAIKPLYT EADLDNLEVT GTLPGLPPYV
RGPRATMYTA QPWTIRQYAG FSTAKESNAF YRRNLAAGQK GLSVAFDLAT HRGYDSDNPR
VAGDVGKAGV AIDTVEDMKV LFDQIPLDKM SVSMTMNGAV LPVLAFYIVA AEEQGVTPDK
LTGTIQNDIL KEYLCRNTYI YPPKPSMRII ADIIAWCSGN MPRFNTISIS GYHMGEAGAN
CVQQVAFTLA DGIEYIKAAI SAGLKIDDFA PRLSFFFGIG MDLFMNVAML RAARYLWSEA
VSGFGAQDPK SLALRTHCQT SGWSLTEQDP YNNVIRTTIE ALAATLGGTQ SLHTNAFDEA
LGLPTDFSAR IARNTQIIIQ EESELCRTVD PLAGSYYVES LTDQIVKQAR AIIQQIDEAG
GMAKAIEAGL PKRMIEEASA REQSLIDQGK RVIVGVNKYK LDHEDETDVL EIDNVMVRNE
QIASLERIRA TRDDAAVTAT LNALTHAAQH NENLLAAAVN AARVRATLGE ISDALEAAFD
RYLVPSQCVT GVIAQSYHQS EKSATEFDAI VAQTEQFLAD NGRRPRILIA KMGQDGHDRG
AKVIASAYSD LGFDVDLSPM FSTPEEIARL AVENDVHVVG ASSLAAGHKT LIPELVEALK
KWGREDICVV AGGVIPPQDY AFLQERGVAA IYGPGTPMLD SVRDVLNLIS QHHD
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