| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2993 |
|---|
| Symbol | |
|---|
| ID | 6144579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 3074481 |
|---|
| End bp | 3075710 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641617862 |
|---|
| Product | serine transporter family protein |
|---|
| Protein accession | YP_001745014 |
|---|
| Protein GI | 170684281 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0814] Amino acid permeases |
|---|
| TIGRFAM ID | [TIGR00814] serine transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.07384 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAATA TTTGGTCAAA AGAAGAAACT CTGTGGAGTT TCGCGCTCTA CGGCACAGCC
GTTGGTGCAG GCACGCTCTT CCTTCCTATT CAGTTAGGTT CGGCAGGGGC TGTGGTCCTG
TTTATTACTG CTCTGGTCGC CTGGCCTTTA ACATATTGGC CACATAAAGC CTTATGCCAG
TTCATCCTCT CATCAAAAAC ATCAGCAGGT GAAGGGATAA CGGGCGCGGT AACACACTAC
TATGGCAAGA AGATTGGTAA TCTGATTACC ACGCTGTACT TCATCGCCTT TTTTGTCGTC
GTGTTGATAT ATGCCGTGGC AATTACCAAC TCACTTACGG AACAGCTGGC AAAGCATATG
GTTATTGATC TTCGCATCCG TATGTTGGTG AGTCTGGGTG TTGTATTAAT CCTGAATCTC
ATTTTTCTGA TGGGACGCCA TGCCACTATT CGGGTAATGG GATTTTTGGT ATTCCCATTG
ATTGCCTATT TCTTATTTCT TTCTATTTAC CTGGTCGGTA GTTGGCAACC TGATCTATTA
ACTACCCAGG TAGAGTTCAA TCAGAATACC CTTCACCAGA TATGGATATC GATTCCCGTG
ATGGTTTTCG CCTTTAGCCA TACGCCCATT ATTTCTACGT TTGCCATAGA CAGACGTGAA
AAATATGGCG AACATGCTAT GGATAAATGC AAAAAAATTA TGAAAGTCGC TTATCTCATC
ATCTGCATAA GTGTACTGTT CTTTGTCTTT AGCTGCCTGC TTTCTATTCC ACCTTCGTAT
ATTGAAGCGG CTAAAGAAGA AGGGGTTACC ATTTTATCGG CGCTTTCTAT GCTGCCGAAC
GCCCCAGCAT GGTTGTCAAT TTCCGGGATT ATTGTCGCAG TAGTTGCGAT GTCGAAATCA
TTCCTGGGTA CGTACTTTGG CGTTATTGAA GGTGCCACAG AGGTCGTCAA AACAACACTA
CAGCAGGTTG GTGTAAAGAA AAGTCGTGCA TTTAACCGCG CACTATCAAT TATGTTGGTA
TCGCTGATTA CCTTCATTGT TTGTTGCATT AACCCGAACG CGATTTCGAT GATTTACGCG
ATCAGCGGCC CGCTCATTGC CATGATACTT TTCATCATGC CTACGCTGTC AACGTATCTC
ATCCCGGCGC TTAAACCCTG GCGTTCCATC GGAAATCTGA TTACGCTGAT CGTGGGTATC
TTGTGCGTAT CGGTAATGTT CTTTAGCTAA
|
|---|
| Protein sequence | MSNIWSKEET LWSFALYGTA VGAGTLFLPI QLGSAGAVVL FITALVAWPL TYWPHKALCQ
FILSSKTSAG EGITGAVTHY YGKKIGNLIT TLYFIAFFVV VLIYAVAITN SLTEQLAKHM
VIDLRIRMLV SLGVVLILNL IFLMGRHATI RVMGFLVFPL IAYFLFLSIY LVGSWQPDLL
TTQVEFNQNT LHQIWISIPV MVFAFSHTPI ISTFAIDRRE KYGEHAMDKC KKIMKVAYLI
ICISVLFFVF SCLLSIPPSY IEAAKEEGVT ILSALSMLPN APAWLSISGI IVAVVAMSKS
FLGTYFGVIE GATEVVKTTL QQVGVKKSRA FNRALSIMLV SLITFIVCCI NPNAISMIYA
ISGPLIAMIL FIMPTLSTYL IPALKPWRSI GNLITLIVGI LCVSVMFFS
|
|---|
| |