Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_2616 |
Symbol | acrD |
ID | 6146452 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 2671904 |
End bp | 2675017 |
Gene Length | 3114 bp |
Protein Length | 1037 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641617487 |
Product | aminoglycoside/multidrug efflux system |
Protein accession | YP_001744652 |
Protein GI | 170683475 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.935344 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGAATT TCTTTATTGA TCGCCCCATT TTTGCCTGGG TGCTGGCAAT CCTGTTGTGT CTGACAGGTA CCCTGGCGAT TTTTTCATTG CCCGTTGAAC AATACCCCGA TCTCGCGCCA CCGAATGTGC GAGTGACCGC TAACTATCCC GGCGCATCGG CCCAGACGCT GGAAAACACC GTGACCCAGG TTATCGAGCA AAATATGACC GGCCTCGATA ATCTCATGTA TATGTCGTCT CAGAGCAGTG GCACCGGCCA GGCATCTGTC ACTTTAAGTT TTAAAGCAGG CACCGATCCG GACGAAGCCG TGCAGCAAGT ACAAAACCAG CTGCAATCAG CCATGCGAAA GTTACCGCAG GCGGTGCAAA ATCAGGGCGT GACGGTGCGT AAAACCGGCG ATACCAATAT TCTGACCATT GCCTTCGTCT CTACCGATGG TTCGATGGAT AAACAGGATA TTGCCGATTA CGTTGCCAGT AATATTCAGG ATCCGTTAAG CCGCGTGAAT GGCGTCGGGG ATATCGATGC CTATGGTTCG CAATATTCCA TGCGTATCTG GCTGGACCCG GCGAAACTCA ACAGTTTCCA GATGACGGCT AAAGATGTCA CTGATGCCAT TGAGTCACAG AACGCGCAGA TTGCGGTTGG GCAACTTGGT GGTACGCCTT CCGTCGATAA GCAGGCGCTC AACGCCACCA TTAACGCCCA GTCACTGCTA CAAACACCAG AACAGTTCCG CGATATCACC TTGCGGGTGA ATCAGGACGG CTCAGAGGTA AGGCTGGGCG ATGTCGCCAC CATCGAAATG GGGGCGGAAA AATACGATTA TCTTAGCCGC TTCAATGGTA TGCCAGCCTC CGGGCTGGGG GTAAAACTGG CCTCCGGCGC GAACGAAATG GCGACAGCGG AGCTGGTGCT CAATCGTCTC GACGAGCTGG CGCAGTATTT CCCGCACGGA CTGGAATACA AGGTGGCGTA TGAAACCACC TCGTTTGTTA AAGCCTCCAT TGAAGACGTG GTGAAAACGC TGCTGGAAGC TATCGCTCTG GTTTTCCTCG TTATGTATCT GTTCCTGCAA AACTTCCGCG CCACGCTGAT ACCCACTATC GCCGTGCCGG TGGTGTTGAT GGGAACCTTC TCCGTACTTT ATGCCTTCGG TTACAGCGTC AACACCTTAA CCATGTTCGC GATGGTGCTG GCGATCGGTC TGCTGGTGGA TGACGCCATC GTGGTGGTGG AAAACGTCGA ACGTATTATG AGTGAGGAAG GACTCACTCC TCGCGAAGCC ACACGTAAAT CGATGGGGCA GATCCAGGGG GCACTGGTCG GGATTGCGAT GGTGCTTTCG GCGGTATTTG TACCAATGGC CTTCTTCGGC GGCACCACCG GTGCCATCTA TCGCCAGTTC TCTATTACCA TTGTTGCAGC GATGGTGCTG TCAGTACTGG TAGCGATGAT CCTCACTCCG GCTCTGTGTG CCACGCTACT TAAGCCACTG AAAAAAGGTG AGCATCACGG GCAAAAAGGC TTTTTTGCCT GGTTTAACCA GATGTTTAAC CGCAACGCCG AACGCTACGA AAAAGGGGTG GCGAAAATTC TCCACCGTAG CCTGCGCTGG ATTGTGATTT ATGTCCTGCT GCTTGGCGGC ATGGTGTTCC TGTTCCTGCG TTTGCCGACG TCGTTCTTGC CACTGGAAGA CCGTGGCATG TTTACTACCT CGGTACAGTT GCCCAGCGGT TCAACCCAAC AACAGACCCT GAAAGTCGTT GAGCAAATCG AGAAATACTA CTTCACCCAT GAAAAAGACA ACATCATGTC GGTGTTTGCC ACTGTTGGTT CTGGCCCTGG GGGTAACGGG CAAAACGTGG CGAGAATGTT TATCCGCCTG AAAGACTGGA GCGAACGCGA CAGTAAGACC GGCACCTCGT TTGCCATTAT CGAGCGTGCA ACGAAGGCGT TTAACAAGAT TAAAGAAGCT CGCGTTATCG CCAGCAGCCC GCCAGCAATT AGCGGTCTTG GTAGTTCTGC GGGTTTTGAT ATGGAGTTGC AGGACCACGC TGGAGCGGGT CACGATGCGC TGATGGCAGC ACGTAACCAG TTGCTGGCGC TGGCGGCGGA AAACCCGGAG CTAACCCGTG TGCGCCATAA CGGCCTCGAC GACAGTCCGC AGTTGCAGAT TGATATCGAC CAGCGTAAAG CTCAGGCGCT GGGCGTTGCT ATCGACGATA TTAACGACAC ACTGCAAACC GCCTGGGGTT CGAGCTATGT GAATGACTTT ATGGATCGCG GTCGCGTGAA GAAAGTCTAT GTGCAGGCAG CTGCGCCGTA TCGCATGCTG CCAGATGACA TCAATCTCTG GTATGTCCGA AATAAAGATG GCGGCATGGT GCCCTTCTCT GCTTTCGCGA CCTCACGCTG GGAGACAGGC TCGCCGCGTC TGGAACGCTA TAACGGTTAT TCTGCGGTAG AGATTGTAGG GGAAGCCGCA CCGGGGGTCA GTACCGGTAC GGCGATGGAT ATTATGGAAT CGTTAGTGAA GCAGTTGCCA AACGGCTTTG GTCTGGAGTG GACGGCGATG TCGTATCAGG AGCGGCTTTC CGGCGCGCAG GCTCCGGCGC TGTACGCCAT TTCCTTGCTG GTGGTATTCC TGTGTCTTGC GGCGTTGTAT GAAAGCTGGT CGGTGCCGTT CTCGGTAATG CTGGTCGTGC CGCTGGGGGT TATCGGCGCG CTGCTGGCAA CCTGGATGCG CGGGCTGGAA AACGACGTTT ACTTCCAGGT GGGCCTGTTA ACGGTCATTG GTTTATCGGC GAAAAACGCC ATCCTGATCG TCGAGTTTGC TAACGAGATG AACCAAAAAG GCCACGACCT GTTTGAAGCG ACGCTCCACG CCTGCCGTCA GCGTTTACGC CCGATTCTGA TGACTTCGCT GGCATTTATC TTCGGCGTAT TGCCAATGGC AACCAGCACG GGTGCCGGTT CCGGTGGTCA GCATGCGGTG GGTACTGGCG TAATGGGCGG GATGATTTCG GCCACTATTC TGGCTATTTA CTTCGTGCCG CTGTTCTTTG TGCTGGTGCG CCGCCGCTTC CCGCTGAAGC CGCGCCCGGA ATAA
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Protein sequence | MANFFIDRPI FAWVLAILLC LTGTLAIFSL PVEQYPDLAP PNVRVTANYP GASAQTLENT VTQVIEQNMT GLDNLMYMSS QSSGTGQASV TLSFKAGTDP DEAVQQVQNQ LQSAMRKLPQ AVQNQGVTVR KTGDTNILTI AFVSTDGSMD KQDIADYVAS NIQDPLSRVN GVGDIDAYGS QYSMRIWLDP AKLNSFQMTA KDVTDAIESQ NAQIAVGQLG GTPSVDKQAL NATINAQSLL QTPEQFRDIT LRVNQDGSEV RLGDVATIEM GAEKYDYLSR FNGMPASGLG VKLASGANEM ATAELVLNRL DELAQYFPHG LEYKVAYETT SFVKASIEDV VKTLLEAIAL VFLVMYLFLQ NFRATLIPTI AVPVVLMGTF SVLYAFGYSV NTLTMFAMVL AIGLLVDDAI VVVENVERIM SEEGLTPREA TRKSMGQIQG ALVGIAMVLS AVFVPMAFFG GTTGAIYRQF SITIVAAMVL SVLVAMILTP ALCATLLKPL KKGEHHGQKG FFAWFNQMFN RNAERYEKGV AKILHRSLRW IVIYVLLLGG MVFLFLRLPT SFLPLEDRGM FTTSVQLPSG STQQQTLKVV EQIEKYYFTH EKDNIMSVFA TVGSGPGGNG QNVARMFIRL KDWSERDSKT GTSFAIIERA TKAFNKIKEA RVIASSPPAI SGLGSSAGFD MELQDHAGAG HDALMAARNQ LLALAAENPE LTRVRHNGLD DSPQLQIDID QRKAQALGVA IDDINDTLQT AWGSSYVNDF MDRGRVKKVY VQAAAPYRML PDDINLWYVR NKDGGMVPFS AFATSRWETG SPRLERYNGY SAVEIVGEAA PGVSTGTAMD IMESLVKQLP NGFGLEWTAM SYQERLSGAQ APALYAISLL VVFLCLAALY ESWSVPFSVM LVVPLGVIGA LLATWMRGLE NDVYFQVGLL TVIGLSAKNA ILIVEFANEM NQKGHDLFEA TLHACRQRLR PILMTSLAFI FGVLPMATST GAGSGGQHAV GTGVMGGMIS ATILAIYFVP LFFVLVRRRF PLKPRPE
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