Gene EcSMS35_2616 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_2616 
SymbolacrD 
ID6146452 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp2671904 
End bp2675017 
Gene Length3114 bp 
Protein Length1037 aa 
Translation table11 
GC content55% 
IMG OID641617487 
Productaminoglycoside/multidrug efflux system 
Protein accessionYP_001744652 
Protein GI170683475 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.935344 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGAATT TCTTTATTGA TCGCCCCATT TTTGCCTGGG TGCTGGCAAT CCTGTTGTGT 
CTGACAGGTA CCCTGGCGAT TTTTTCATTG CCCGTTGAAC AATACCCCGA TCTCGCGCCA
CCGAATGTGC GAGTGACCGC TAACTATCCC GGCGCATCGG CCCAGACGCT GGAAAACACC
GTGACCCAGG TTATCGAGCA AAATATGACC GGCCTCGATA ATCTCATGTA TATGTCGTCT
CAGAGCAGTG GCACCGGCCA GGCATCTGTC ACTTTAAGTT TTAAAGCAGG CACCGATCCG
GACGAAGCCG TGCAGCAAGT ACAAAACCAG CTGCAATCAG CCATGCGAAA GTTACCGCAG
GCGGTGCAAA ATCAGGGCGT GACGGTGCGT AAAACCGGCG ATACCAATAT TCTGACCATT
GCCTTCGTCT CTACCGATGG TTCGATGGAT AAACAGGATA TTGCCGATTA CGTTGCCAGT
AATATTCAGG ATCCGTTAAG CCGCGTGAAT GGCGTCGGGG ATATCGATGC CTATGGTTCG
CAATATTCCA TGCGTATCTG GCTGGACCCG GCGAAACTCA ACAGTTTCCA GATGACGGCT
AAAGATGTCA CTGATGCCAT TGAGTCACAG AACGCGCAGA TTGCGGTTGG GCAACTTGGT
GGTACGCCTT CCGTCGATAA GCAGGCGCTC AACGCCACCA TTAACGCCCA GTCACTGCTA
CAAACACCAG AACAGTTCCG CGATATCACC TTGCGGGTGA ATCAGGACGG CTCAGAGGTA
AGGCTGGGCG ATGTCGCCAC CATCGAAATG GGGGCGGAAA AATACGATTA TCTTAGCCGC
TTCAATGGTA TGCCAGCCTC CGGGCTGGGG GTAAAACTGG CCTCCGGCGC GAACGAAATG
GCGACAGCGG AGCTGGTGCT CAATCGTCTC GACGAGCTGG CGCAGTATTT CCCGCACGGA
CTGGAATACA AGGTGGCGTA TGAAACCACC TCGTTTGTTA AAGCCTCCAT TGAAGACGTG
GTGAAAACGC TGCTGGAAGC TATCGCTCTG GTTTTCCTCG TTATGTATCT GTTCCTGCAA
AACTTCCGCG CCACGCTGAT ACCCACTATC GCCGTGCCGG TGGTGTTGAT GGGAACCTTC
TCCGTACTTT ATGCCTTCGG TTACAGCGTC AACACCTTAA CCATGTTCGC GATGGTGCTG
GCGATCGGTC TGCTGGTGGA TGACGCCATC GTGGTGGTGG AAAACGTCGA ACGTATTATG
AGTGAGGAAG GACTCACTCC TCGCGAAGCC ACACGTAAAT CGATGGGGCA GATCCAGGGG
GCACTGGTCG GGATTGCGAT GGTGCTTTCG GCGGTATTTG TACCAATGGC CTTCTTCGGC
GGCACCACCG GTGCCATCTA TCGCCAGTTC TCTATTACCA TTGTTGCAGC GATGGTGCTG
TCAGTACTGG TAGCGATGAT CCTCACTCCG GCTCTGTGTG CCACGCTACT TAAGCCACTG
AAAAAAGGTG AGCATCACGG GCAAAAAGGC TTTTTTGCCT GGTTTAACCA GATGTTTAAC
CGCAACGCCG AACGCTACGA AAAAGGGGTG GCGAAAATTC TCCACCGTAG CCTGCGCTGG
ATTGTGATTT ATGTCCTGCT GCTTGGCGGC ATGGTGTTCC TGTTCCTGCG TTTGCCGACG
TCGTTCTTGC CACTGGAAGA CCGTGGCATG TTTACTACCT CGGTACAGTT GCCCAGCGGT
TCAACCCAAC AACAGACCCT GAAAGTCGTT GAGCAAATCG AGAAATACTA CTTCACCCAT
GAAAAAGACA ACATCATGTC GGTGTTTGCC ACTGTTGGTT CTGGCCCTGG GGGTAACGGG
CAAAACGTGG CGAGAATGTT TATCCGCCTG AAAGACTGGA GCGAACGCGA CAGTAAGACC
GGCACCTCGT TTGCCATTAT CGAGCGTGCA ACGAAGGCGT TTAACAAGAT TAAAGAAGCT
CGCGTTATCG CCAGCAGCCC GCCAGCAATT AGCGGTCTTG GTAGTTCTGC GGGTTTTGAT
ATGGAGTTGC AGGACCACGC TGGAGCGGGT CACGATGCGC TGATGGCAGC ACGTAACCAG
TTGCTGGCGC TGGCGGCGGA AAACCCGGAG CTAACCCGTG TGCGCCATAA CGGCCTCGAC
GACAGTCCGC AGTTGCAGAT TGATATCGAC CAGCGTAAAG CTCAGGCGCT GGGCGTTGCT
ATCGACGATA TTAACGACAC ACTGCAAACC GCCTGGGGTT CGAGCTATGT GAATGACTTT
ATGGATCGCG GTCGCGTGAA GAAAGTCTAT GTGCAGGCAG CTGCGCCGTA TCGCATGCTG
CCAGATGACA TCAATCTCTG GTATGTCCGA AATAAAGATG GCGGCATGGT GCCCTTCTCT
GCTTTCGCGA CCTCACGCTG GGAGACAGGC TCGCCGCGTC TGGAACGCTA TAACGGTTAT
TCTGCGGTAG AGATTGTAGG GGAAGCCGCA CCGGGGGTCA GTACCGGTAC GGCGATGGAT
ATTATGGAAT CGTTAGTGAA GCAGTTGCCA AACGGCTTTG GTCTGGAGTG GACGGCGATG
TCGTATCAGG AGCGGCTTTC CGGCGCGCAG GCTCCGGCGC TGTACGCCAT TTCCTTGCTG
GTGGTATTCC TGTGTCTTGC GGCGTTGTAT GAAAGCTGGT CGGTGCCGTT CTCGGTAATG
CTGGTCGTGC CGCTGGGGGT TATCGGCGCG CTGCTGGCAA CCTGGATGCG CGGGCTGGAA
AACGACGTTT ACTTCCAGGT GGGCCTGTTA ACGGTCATTG GTTTATCGGC GAAAAACGCC
ATCCTGATCG TCGAGTTTGC TAACGAGATG AACCAAAAAG GCCACGACCT GTTTGAAGCG
ACGCTCCACG CCTGCCGTCA GCGTTTACGC CCGATTCTGA TGACTTCGCT GGCATTTATC
TTCGGCGTAT TGCCAATGGC AACCAGCACG GGTGCCGGTT CCGGTGGTCA GCATGCGGTG
GGTACTGGCG TAATGGGCGG GATGATTTCG GCCACTATTC TGGCTATTTA CTTCGTGCCG
CTGTTCTTTG TGCTGGTGCG CCGCCGCTTC CCGCTGAAGC CGCGCCCGGA ATAA
 
Protein sequence
MANFFIDRPI FAWVLAILLC LTGTLAIFSL PVEQYPDLAP PNVRVTANYP GASAQTLENT 
VTQVIEQNMT GLDNLMYMSS QSSGTGQASV TLSFKAGTDP DEAVQQVQNQ LQSAMRKLPQ
AVQNQGVTVR KTGDTNILTI AFVSTDGSMD KQDIADYVAS NIQDPLSRVN GVGDIDAYGS
QYSMRIWLDP AKLNSFQMTA KDVTDAIESQ NAQIAVGQLG GTPSVDKQAL NATINAQSLL
QTPEQFRDIT LRVNQDGSEV RLGDVATIEM GAEKYDYLSR FNGMPASGLG VKLASGANEM
ATAELVLNRL DELAQYFPHG LEYKVAYETT SFVKASIEDV VKTLLEAIAL VFLVMYLFLQ
NFRATLIPTI AVPVVLMGTF SVLYAFGYSV NTLTMFAMVL AIGLLVDDAI VVVENVERIM
SEEGLTPREA TRKSMGQIQG ALVGIAMVLS AVFVPMAFFG GTTGAIYRQF SITIVAAMVL
SVLVAMILTP ALCATLLKPL KKGEHHGQKG FFAWFNQMFN RNAERYEKGV AKILHRSLRW
IVIYVLLLGG MVFLFLRLPT SFLPLEDRGM FTTSVQLPSG STQQQTLKVV EQIEKYYFTH
EKDNIMSVFA TVGSGPGGNG QNVARMFIRL KDWSERDSKT GTSFAIIERA TKAFNKIKEA
RVIASSPPAI SGLGSSAGFD MELQDHAGAG HDALMAARNQ LLALAAENPE LTRVRHNGLD
DSPQLQIDID QRKAQALGVA IDDINDTLQT AWGSSYVNDF MDRGRVKKVY VQAAAPYRML
PDDINLWYVR NKDGGMVPFS AFATSRWETG SPRLERYNGY SAVEIVGEAA PGVSTGTAMD
IMESLVKQLP NGFGLEWTAM SYQERLSGAQ APALYAISLL VVFLCLAALY ESWSVPFSVM
LVVPLGVIGA LLATWMRGLE NDVYFQVGLL TVIGLSAKNA ILIVEFANEM NQKGHDLFEA
TLHACRQRLR PILMTSLAFI FGVLPMATST GAGSGGQHAV GTGVMGGMIS ATILAIYFVP
LFFVLVRRRF PLKPRPE