Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_2566 |
Symbol | ligA |
ID | 6145611 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 2619139 |
End bp | 2621154 |
Gene Length | 2016 bp |
Protein Length | 671 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641617437 |
Product | NAD-dependent DNA ligase LigA |
Protein accession | YP_001744602 |
Protein GI | 170680446 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000140501 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAATCAA TCGAACAACA ACTGACAGAA CTGCGAACGA CGCTTCGCCA TCATGAATAT CTTTATCATG TGATGGATGC GCCGGAAATT CCCGACGCGG AATACGACAG GTTGATGCGC GAACTGCGCG AGCTGGAAAC CAAACATCCA GAACTGATTA CGCCTGATTC GCCTACCCAA CGTGTAGGTG CTGCGCCGCT GGCGGCTTTC AGCCAGATCC GCCATGAAGT GCCAATGCTG TCGCTGGATA ACGTTTTTGA TGAAGAAAGC TTTCTTGCCT TCAACAAACG AGTGCAGGAC CGTCTGAAAA GCAACGAGAA AGTCACCTGG TGCTGTGAGC TGAAGCTGGA TGGTCTTGCC GTCAGTATTC TGTATGAAAA TGGTGTTTTA GTCAGTGCCG CGACGCGTGG CGATGGCACC ACCGGGGAAG ATATCACGTC TAATGTGCGT ACTATTCGCG CCATTCCGCT GAAGCTACAC GGAGAGAATA TCCCGGCGCG TCTGGAAGTG CGTGGTGAAG TGTTCCTGCC GCAGGCGGGG TTCGAAAAGA TTAACGAAGA TGCGCGACGC ACGGGCGGGA AAGTTTTTGC TAACCCACGT AATGCGGCAG CTGGTTCACT GCGTCAGCTT GATCCGCGTA TTACAGCGAA GCGACCGCTC ACTTTTTTCT GCTATGGCGT TGGTGTTCTG GAAGGTGGCG AGCTGCCGGA TACTCATCTT GGCCGCTTAC TGCAATTTAA AAAGTGGGGG TTGCCGGTCA GCGATCGGGT AACGCTTTGT GAATCGGCGG AAGAAGTGCT GGCGTTCTAT CACAAAGTGG AAGAAGACCG CCCGACGCTG GGCTTTGATA TCGACGGCGT GGTGATTAAA GTCAACTCAC TGGCACAGCA GGAGCAGCTT GGCTTTGTCG CGCGTGCCCC GCGCTGGGCG GTAGCGTTTA AATTTCCGGC GCAGGAACAG ATGACCTTTG TGCGTGACGT CGAGTTTCAG GTTGGGCGTA CTGGCGCGAT TACGCCTGTT GCGCGTCTGG AACCTGTCCA TGTTGCTGGC GTGCTGGTGA GTAACGCAAC CTTACACAAT GCGGATGAAA TCGAACGTCT TGGTTTACGC ATTGGCGATA AAGTGGTGAT TCGCCGCGCT GGCGACGTGA TCCCGCAGGT GGTTAACGTC GTGCTTTCTG AACGCCCGGA AGATACCCGT GAGGTTGTAT TCCCGACGCA TTGTCCGGTA TGTGGTTCTG ACGTTGAGCG TGTGGAAGGT GAAGCGGTTG CCCGCTGTAC CGGTGGCCTG ATTTGCGGTG CGCAGCGTAA AGAGTCGCTG AAACACTTTG TTTCCCGCCG TGCGATGGAT GTTGACGGAA TGGGCGACAA AATCATCGAT CAGCTGGTTG AAAAAGAATA TGTCCACACT CCGGCGGATC TGTTCAAACT CACCGCAGGC AAACTGACCG GACTGGAGCG TATGGGGCCA AAATCGGCAC AAAACGTGGT TAACGCGCTG GAAAAAGCGA AAGAAACCAC CTTTGCTCGC TTCCTCTATG CACTTGGCAT CCGTGAAGTC GGCGAGGCCA CCGCAGCAGG TCTGGCGGCA TATTTCGGCA CGCTGGAAGC GCTGGAAGCC GCTTCGATTG AAGAGCTGCA AAAGGTACCT GATGTTGGTA TTGTCGTTGC CTCCCACGTT CACAACTTCT TTGCCGAAGA AAGCAACCGC AATGTCATCA GCGAGCTGTT GGCGGAAGGT GTTCACTGGC CTGAGCCGAT CGTTATCAAT GCGGAAGAGA TTGACAGTCC GTTTGCTGGT AAAACCGTGG TGCTTACGGG CAGCTTAAGC CAGATGTCGC GTGATGACGC TAAAGCTCGA CTGGTCGAAC TGGGGGCGAA AGTCGCGGGC AGCGTGTCGA AGAAAACCGA TCTGGTGATA GCGGGTGAAG CTGCAGGATC TAAACTGGCG AAGGCGCAGG AACTGGGCAT TGAAGTCATC GACGAAACGG AAATGCTGCG TTTGCTGGGT AGCTGA
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Protein sequence | MESIEQQLTE LRTTLRHHEY LYHVMDAPEI PDAEYDRLMR ELRELETKHP ELITPDSPTQ RVGAAPLAAF SQIRHEVPML SLDNVFDEES FLAFNKRVQD RLKSNEKVTW CCELKLDGLA VSILYENGVL VSAATRGDGT TGEDITSNVR TIRAIPLKLH GENIPARLEV RGEVFLPQAG FEKINEDARR TGGKVFANPR NAAAGSLRQL DPRITAKRPL TFFCYGVGVL EGGELPDTHL GRLLQFKKWG LPVSDRVTLC ESAEEVLAFY HKVEEDRPTL GFDIDGVVIK VNSLAQQEQL GFVARAPRWA VAFKFPAQEQ MTFVRDVEFQ VGRTGAITPV ARLEPVHVAG VLVSNATLHN ADEIERLGLR IGDKVVIRRA GDVIPQVVNV VLSERPEDTR EVVFPTHCPV CGSDVERVEG EAVARCTGGL ICGAQRKESL KHFVSRRAMD VDGMGDKIID QLVEKEYVHT PADLFKLTAG KLTGLERMGP KSAQNVVNAL EKAKETTFAR FLYALGIREV GEATAAGLAA YFGTLEALEA ASIEELQKVP DVGIVVASHV HNFFAEESNR NVISELLAEG VHWPEPIVIN AEEIDSPFAG KTVVLTGSLS QMSRDDAKAR LVELGAKVAG SVSKKTDLVI AGEAAGSKLA KAQELGIEVI DETEMLRLLG S
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