| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2565 |
|---|
| Symbol | |
|---|
| ID | 6143329 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 2617924 |
|---|
| End bp | 2618922 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641617435 |
|---|
| Product | bile acid/Na+ symporter family protein |
|---|
| Protein accession | YP_001744600 |
|---|
| Protein GI | 170680783 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0385] Predicted Na+-dependent transporter |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00000897855 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTTT TTCGTATCCT CGATCCTTTC ACCTTAACCC TGATCACGGT GGTGCTGCTG
GCCTCTTTCT TTCCGGCCAG AGGCGATTCC GTTCCCTTCT TTGAAAATCT GACTACCGCA
GCCATTGCTC TGCTGTTCTT TATGCACGGC GCGAAGTTAT CGCGAGAAGC CATTATTGCA
GGCGGTGGTC ATTGGCGACT GCATTTATGG GTGATGTGTA GCACCTTCGT GCTGTTCCCA
ATTTTGGGCG TGCTGTTTGC CTGGTGGAAA CCGGTAAATG TCGCCCCGAT GCTCTATTCC
GGTTTTCTCT ACTTGTGCAT TCTTCCTGCT ACCGTGCAGT CTGCAATCGC CTTCACGTCA
ATGGCGGGCG GTAACGTCGC GGCGGCGGTT TGTTCTGCGT CAGCATCCAG CCTGCTGGGG
ATTTTCCTTT CACCATTGCT GGTTGGTCTG GTGATGAATG TTCACGGTGC AGGGGGCAGC
CTTGAGCAGG TCGGTAAAAT TATGCTGCAA CTGCTGCTGC CGTTTGTGTT GGGGCATCTT
TCCCGGCCGT GGATTGGTGA CTGGGTGTCG CGCAATAAAA AATGGATTGC GAAAACTGAC
CAGACGTCCA TTCTGTTGGT GGTTTATACG GCATTCAGCG AAGCCGTCGT TAACGGTATC
TGGCACAAAG TTGGCTGGGG ATCATTGCTG TTTATCGTGG TGGTCAGTTG CGTTCTTCTG
GCTATCGTGA TTGTAGTTAA CGTCTTTATG GCACGCCGAC TGGGCTTCAA TAAGGCAGAT
GAAATTACTA TCGTCTTTTG TGGTTCGAAA AAGAGTCTGG CAAATGGCAT CCCGATGGCA
AACATTCTGT TCCCCACATC GGTGATCGGT ATGATGGTGC TGCCTCTGAT GATTTTCCAT
CAGATCCAAT TGATGGTCTG TGCGGTGCTG GCGCGTCGAT ACAAACGCCA GACCGAACAG
TTACAGGCGC AGCAGGAAAG CAGCGCCGAT AAAGCTTAA
|
|---|
| Protein sequence | MKLFRILDPF TLTLITVVLL ASFFPARGDS VPFFENLTTA AIALLFFMHG AKLSREAIIA
GGGHWRLHLW VMCSTFVLFP ILGVLFAWWK PVNVAPMLYS GFLYLCILPA TVQSAIAFTS
MAGGNVAAAV CSASASSLLG IFLSPLLVGL VMNVHGAGGS LEQVGKIMLQ LLLPFVLGHL
SRPWIGDWVS RNKKWIAKTD QTSILLVVYT AFSEAVVNGI WHKVGWGSLL FIVVVSCVLL
AIVIVVNVFM ARRLGFNKAD EITIVFCGSK KSLANGIPMA NILFPTSVIG MMVLPLMIFH
QIQLMVCAVL ARRYKRQTEQ LQAQQESSAD KA
|
|---|
| |