| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2179 |
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| Symbol | |
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| ID | 6143011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 2185632 |
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| End bp | 2188232 |
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| Gene Length | 2601 bp |
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| Protein Length | 866 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641617055 |
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| Product | outer membrane usher protein fimD-like protein |
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| Protein accession | YP_001744229 |
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| Protein GI | 170682116 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.932643 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 0.834799 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATAGAA CTCAACGACA ACACAGCCTG TTAAGCTCTG GTGGAGTGCC ATCGTTTATT
GGTGGGCTGG TGGTGTTTGT GTCGGCAGCG TTCAATGCAC AAGCTGAAAC CTGGTTCGAT
CCAGCCTTTT TCAAAGATGA TCCCTCAATG GTGGCTGATT TGTCTCGTTT CGAAAAAGGG
CAAAAAATAA CGCCAGGGGT TTATCGAGTC GATATTGTTC TGAATCAGAC AATTGTAGAT
ACGCGCAACG TCAATTTTGT TGAGATAACG CCAGAGAAGG GGATTGCCGC CTGTTTGACG
ACTGAAAGCC TGGATGCAAT GGGCGTGAAT ACTGATGCGT TTCCGGCTTT TAAACAACTG
GATAAACAAG CGTGTGCGCC ATTGGCGGAA ATTATTCCGG ATGCCAGCGT AACTTTTAAT
GTGAATAAAC TCCGTCTGGA AATTTCAGTA CCGCAAATCG CCATCAAAAG TAACGCTCGT
GGTTATGTCC CCCCTGAACG TTGGGATGAA GGGATCAACG CGCTATTACT GGGATATTCA
TTTAGCGGGG CTAACAGTAT TCATAGCAGC GCAGGTAGTG ATTCTGGCGA CAGCTATTTT
CTGAATTTAA ACAGTGGCGT TAATTTAGGC CCATGGAGAT TGCGCAACAA TTCAACATGG
AGTCGCAGTA GTGGCCAAAC CGCAGAATGG AAGAATCTCA GCAGCTATTT GCAGCGGGCG
GTGATTCCAT TAAAAGGCGA ACTGACCGTC GGTGATGATT ATACGGCAGG CGATTTTTTT
GATAGCGTCA GCTTTCGTGG CGTGCAGCTG GCGTCAGATG ACAACATGCT GCCAGACAGC
TTGAAAGGGT TTGCGCCAGT GGTGCGTGGT ATCGCCAAAA GCAATGCACA GGTAACGATT
AAGCAAAATG GTTACACCAT CTATCAAACT TATGTTTCGC CTGGCGCTTT TGAGATTAGT
GATCTCTACT CTACGTCGTC GAGTGGTGAT TTGTTGGTTG AAATCAAAGA AGCTGACGGT
AGTGTCAATA GTTACAGTGT GCCCTTTTCC AGCGTGCCAT TACTCCAGCG TCAGGGACGC
ATCAAATATG CGGTGACGCT GGCGAAATAC AGAACCAATA GTAATGACCA GCAAGAAAGT
AAATTTGCTC AGGCCACGCT GCAATGGGGT GGGCCGAGGG GAACGACCTG GTATGGCGGA
GGGCAATATG CTGAATATTA CCGTGCCGCT ATGTTTGGTC TGGGTTTTAA CCTCGGCGAT
TTCGGAGCAA TTTCGTTCGA CGCGACCCAG GCTAAAAGTA CGCTGGCAGA CCAAAGTGAA
CATAAAGGGC AGTCATATCG TTTTCTGTAT GCCAAAACGC TCAACCAATT GGGCACCAAC
TTTCAATTGA TGGGCTACCG CTATTCGACG TCGGGTTTCT ACACCCTTTC CGACACTATG
TATAAACACA TGGATGGCTA CGAATTTAAT GACGGTGATG ATGAAGATAC GCCAATGTGG
TCGCGTTATT ACAATTTGTT TTACACAAAA CGTGGCAAAC TGCAGGTCAA CATCTCCCAG
CAATTAGGCG AGTACGGTTC GTTTTATTTA AGCGGTAGCC AGCAAACTTA CTGGCATACC
GATCAACAGG ATCGGCTATT ACAGTTTGGC TACAACACGC AAATTAAAGA TCTCTCGCTG
GGGGTTTCCT GGAACTACAG TAAGTCCCGT GGTCAACCTG ACGCTGACCA GGTGTTTGCA
CTTAATTTTT CCCTGCCGCT CAATCTGTTG CTCCCCAAAA GTAATGATAG CTATACCAGG
AAAAAAAATT ACGCCTGGAT GACCTCTAAT ACCAGTATCG ATAACGAAGG GCACACTACA
CAAAACCTGG GTTTAACGGA GACACTACTC GATGACGGTA ATCTGAGCTA CAGCGTGCAA
CAGGGATATA ACAGCGAGGG GAAAACGGCT AATGGTAGCG CCAGCATGGA CTACAAAGGG
GCGTTTGCAG ATGCTCGAGT GGGCTACAAC TACAGCGATA ACGGCAGTCA ACAACAACTG
AACTACGCTC TTTCAGGCAG TTTAGTTGCC CATTCGCAGG GTATTACGTT GGGTCAATCA
TTGGGTGAAA CTAATGTCCT GATTGCCGCG CCAGGCGCCG AAAATACTCG TGTGGCGAAC
AGCACCGGGC TGAAAACTGA CTGGCGTGGA TATACCGTTG TGCCTTATGC CACTTCTTAT
CGGGAAAATC GAATTGCACT TGATGCGGCG TCGTTAAAAC GTAACGTGGA TCTTGAAAAT
GCCGTAGTAA ACGTGGTTCC CACCAAAGGG GCATTGGTTC TGGCGGAGTT CAATGCCCAT
GCGGGGGCTA GGGTATTAAT GAAAACATCA AAGCAGGGTA TGCCGCTGAG ATTTGGTGCA
ATGGCAACAC TGGATGGCGC ACAAACAATT AGCGGTATCA TTGATGATGA TGGTTCGCTC
TATATGTCTG GTTTGCCGGC GAAGGGAACG ATAACTGTAC GCTGGGGCGA CGCTCCCGAT
CAAATTTGTC ATATCAGTTA CGAGCTTACC GAACAACAAA TTAACGCTGC GATTACGCGG
ATGGATTCAG TATGCGAATA A
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| Protein sequence | MYRTQRQHSL LSSGGVPSFI GGLVVFVSAA FNAQAETWFD PAFFKDDPSM VADLSRFEKG
QKITPGVYRV DIVLNQTIVD TRNVNFVEIT PEKGIAACLT TESLDAMGVN TDAFPAFKQL
DKQACAPLAE IIPDASVTFN VNKLRLEISV PQIAIKSNAR GYVPPERWDE GINALLLGYS
FSGANSIHSS AGSDSGDSYF LNLNSGVNLG PWRLRNNSTW SRSSGQTAEW KNLSSYLQRA
VIPLKGELTV GDDYTAGDFF DSVSFRGVQL ASDDNMLPDS LKGFAPVVRG IAKSNAQVTI
KQNGYTIYQT YVSPGAFEIS DLYSTSSSGD LLVEIKEADG SVNSYSVPFS SVPLLQRQGR
IKYAVTLAKY RTNSNDQQES KFAQATLQWG GPRGTTWYGG GQYAEYYRAA MFGLGFNLGD
FGAISFDATQ AKSTLADQSE HKGQSYRFLY AKTLNQLGTN FQLMGYRYST SGFYTLSDTM
YKHMDGYEFN DGDDEDTPMW SRYYNLFYTK RGKLQVNISQ QLGEYGSFYL SGSQQTYWHT
DQQDRLLQFG YNTQIKDLSL GVSWNYSKSR GQPDADQVFA LNFSLPLNLL LPKSNDSYTR
KKNYAWMTSN TSIDNEGHTT QNLGLTETLL DDGNLSYSVQ QGYNSEGKTA NGSASMDYKG
AFADARVGYN YSDNGSQQQL NYALSGSLVA HSQGITLGQS LGETNVLIAA PGAENTRVAN
STGLKTDWRG YTVVPYATSY RENRIALDAA SLKRNVDLEN AVVNVVPTKG ALVLAEFNAH
AGARVLMKTS KQGMPLRFGA MATLDGAQTI SGIIDDDGSL YMSGLPAKGT ITVRWGDAPD
QICHISYELT EQQINAAITR MDSVCE
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