Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_2159 |
Symbol | |
ID | 6144060 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 2165816 |
End bp | 2166445 |
Gene Length | 630 bp |
Protein Length | 209 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641617036 |
Product | TfoX family protein |
Protein accession | YP_001744210 |
Protein GI | 170680490 |
COG category | [K] Transcription |
COG ID | [COG3070] Regulator of competence-specific genes |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0000143241 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 0.451422 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAGCC TCTCCTATAA GCGGATCTAT AAATCACAAG AATACCTGGC AACGTTGGGC ACAATTGAAT ACCGATCATT GTTTGGTAGT TACAGCCTGA CTGTTGACGA CACGGTGTTT GCGATGGTTT CTGATGGTGA GTTGTATCTT CGGGCTTGTG AGCAAAGTGC ACAGTACTGT GTAAAACATC CGCCTGTCTG GCTGACATAT AAAAAGTGTG GCCGATCCGT TACCCTCAAT TACTATCGAG TTGATGAAAG TCTATGGCGA AATCAACTGA AGCTGGTGCG TCTGTCGAAA TATTCTCTCG ATGCAGCGCT GAAAGAGAAA AGCACGCGCA ATACCCGGGA AAGACTGAAA GATTTGCCCA ATATGTCTTT TCATCTGGAA GCGATTCTCG GGGAGGTGGG GATTAAGGAT GTACGGGCGT TACGTATACT TGGGGCAAAA ATGTGTTGGT TGCGACTGCG GCAGCAAAAC AGTCTGGTGA CAGAAAAGAT TCTGTTTATG CTTGAAGGGG CCATTATCGG CATTCATGAA GCTGCGCTCC CGGTGGCTCG CCGCCAGGAG CTTGCAGAAT GGGCTGACTC TCTTACGCCG AAACAGGAGT TTCCTGCGGA ACTTGAGTAA
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Protein sequence | MKSLSYKRIY KSQEYLATLG TIEYRSLFGS YSLTVDDTVF AMVSDGELYL RACEQSAQYC VKHPPVWLTY KKCGRSVTLN YYRVDESLWR NQLKLVRLSK YSLDAALKEK STRNTRERLK DLPNMSFHLE AILGEVGIKD VRALRILGAK MCWLRLRQQN SLVTEKILFM LEGAIIGIHE AALPVARRQE LAEWADSLTP KQEFPAELE
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