Gene EcSMS35_2073 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_2073 
Symbol 
ID6143306 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand+ 
Start bp2088176 
End bp2088817 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content49% 
IMG OID641616949 
Productnickel-dependent hydrogenase b-type cytochrome subunit 
Protein accessionYP_001744125 
Protein GI170679945 
COG category[C] Energy production and conversion 
COG ID[COG3038] Cytochrome B561 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.636056 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value0.331643 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTTATTTT TGTGTTGCAA TTCATTCTCC GACACGCCAT TTTCTTTCTC TCGCAAATTC 
GTTTTGGATG CACTTATGTC ATTCACAAAT ACCCCTGAAC GCTATGGTGT TATATCTGCG 
GCCTTACATT GGATAAGCGC AATTATTGTC TACGGCATGT TTGCTTTAGG TCTGTGGATG 
GTCACGCTCA GTTATTACGA TGGCTGGTAT CACAAAGCAC CCGAACTGCA TAAAAGCATC 
GGTATTTTGT TAATGATGGG GCTGGTTATT CGCGTTCTGT GGCGCGTCAT ATCTCCACCG 
CCGGGTCCGC TGCAAAGTTA TTCGTCAATG ACTCGTCTTG GCGCAAAGGC TGGACATCTC 
GCATTGTACC TATTGCTGTT CGCCATCGGC ATCAGCGGCT ATCTGATCTC AACTGCCGAT 
GGTAAACCGA TCAGCGTTTT TGGCTGGTTT GACGTCCCCG CGACCCTCGC CGACGCTGGC 
GCACAGGCTG ACTTTGCCGG TGCCCTGCAT TTTTGGCTCG CGTGGAGCGT CGTAGTACTG 
TCCGTTATGC ATGGATTTAT GGCCCTGAAG CATCATTTCA TCGATAAAGA CGACACTCTG 
AAGCGCATGC TGGGAAAGTC GTCATCTGAC TATGGAGTAT AA
 
Protein sequence
MLFLCCNSFS DTPFSFSRKF VLDALMSFTN TPERYGVISA ALHWISAIIV YGMFALGLWM 
VTLSYYDGWY HKAPELHKSI GILLMMGLVI RVLWRVISPP PGPLQSYSSM TRLGAKAGHL 
ALYLLLFAIG ISGYLISTAD GKPISVFGWF DVPATLADAG AQADFAGALH FWLAWSVVVL 
SVMHGFMALK HHFIDKDDTL KRMLGKSSSD YGV