Gene EcSMS35_2016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_2016 
Symbol 
ID6145170 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp2038372 
End bp2038911 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content53% 
IMG OID641616892 
Producthypothetical protein 
Protein accessionYP_001744068 
Protein GI170679604 
COG category[S] Function unknown 
COG ID[COG3134] Predicted outer membrane lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.000246184 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGAATAAAT CAATGTTGGC GGGTATCGGG ATTGGTGTCG CAGCTGCGCT GGGCGTAGCG 
GCAGTGGCCA GTCTGAACGT GTTTGAACGT GGCCCGCAAT ACGCTCAGGT TGTTTCTGCA
ACCCCAATCA AGGAAACGGT TAAAACACCG CGTCAGGAGT GTCGCAACGT CACAGTGACC
CATCGTCGAC CGGTGCAGGA TGAAAATCGC ATTACCGGGT CGGTGCTCGG CGCTGTTGCT
GGTGGCGTGA TAGGGCATCA GTTTGGTGGT GGTCGCGGTA AAGATGTCGC TACTGTTGTG
GGGGCGCTGG GTGGTGGATA TGCCGGTAAC CAGATCCAGG GCTATCTCCA GGAAAGCGAT
ACTTACACGA CTACGCAACA GCGTTGTAAA ACGGTGTATG ACAAGTCAGA AAAAATGCTC
GGTTATGATG TGACCTATAA GATTGGCGAT CAGCAGGGCA AAATCCGCAT GGACCGCGAT
CCGGGTACGC AGATCCCGCT AGATAGCAAC GGGCAACTGA TTTTGAATAA CAAAGTATAA
 
Protein sequence
MNKSMLAGIG IGVAAALGVA AVASLNVFER GPQYAQVVSA TPIKETVKTP RQECRNVTVT 
HRRPVQDENR ITGSVLGAVA GGVIGHQFGG GRGKDVATVV GALGGGYAGN QIQGYLQESD
TYTTTQQRCK TVYDKSEKML GYDVTYKIGD QQGKIRMDRD PGTQIPLDSN GQLILNNKV