Gene EcSMS35_1835 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_1835 
SymboleefB 
ID6146082 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp1856505 
End bp1859612 
Gene Length3108 bp 
Protein Length1035 aa 
Translation table11 
GC content52% 
IMG OID641616711 
Productmultidrug efflux transport protein EefB 
Protein accessionYP_001743889 
Protein GI170683789 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.000000299016 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTTTCGC GCTTTTTTGT TCGCCGCCCG GTCTTTGCCT GGGTTATCGC CATTTTGATT 
ATGTTGGCGG GGATTCTGGC TATTCGCACA TTACCCGTCG CGCAATATCC TGACGTTGCA
CCGCCGACCA TTAAAATTTC AGCCACTTAT ACTGGTGCTT CTGCCGAAAC GCTGGAGAAC
AGCGTGACTC AGGTTATCGA GCAACAACTC ACTGGGCTTG ATAATTTACT CTATTTCAGC
TCAACCAGTA GCTCTGATGG TTCGGTCAGT ATTAATGTGA CCTTTGAACA AGGTACCGAT
CCAGATACTG CACAGGTTCA GGTGCAGAAT AAAATTCAGC AGGCGGAGTC GCGCCTACCC
AGCGAAGTGC AGCAAACGGG TGTTACGGTG GAGAAATCAC AAAGCAACTT TTTGCTGATT
GCTGCCGTGT ATGACACCAC TGACAAAGCC TCCAGTTCGG ATATCGCCGA CTGGTTGGTC
AGTAACGTTC AGGACCCGCT GGCGCGTGTT GAAGGTGTGG GGAGTCTGCA AGTCTTTGGC
GCGGAATACG CTATGCGCAT CTGGCTTGAC CCGGCCAAAC TGGCGTCTTA CTCGCTAATG
CCTTCAGACG TGCAAAGTGC TATTGAAGCG CAAAACGTGC AGGTTACTGC CGGGAAAATA
GGGGCATTGC CTTCACCGAA TACTCAGCAA CTGACCGCAA CGGTACGTGC GCAGTCTCGC
TTGCAGACGG TGGATCAGTT CAAAAATATT ATCGTGAAAA GCCAGTCAGA CGGCGCAGTT
GTTCGTATAA AAGATGTGGC TCGCGTTGAG ATGGGCAGTG AAGATTATAC CGCTATCGGC
AAACTTAACG GTCACCCGTC TGCCGGGGTT GCTGTAATGC TTTCGCCCGG TGCGAATGCG
CTGAATACGG CGACGCTGGT CAAGGATAAG ATTGCCGAAT TCCAGCGGAA CATGCCGCAG
GGATACGACA TCGCATACCC GAAAGACAGC ACTGAATTTA TTAAAATCTC CGTAGAGGAC
GTAATTCAGA CGCTGTTTGA AGCCATCGTA TTGGTGGTTT GCGTGATGTA TTTATTCCTG
CAAAACCTGC GTGCCACACT GATTCCGGCG TTAGCTGTCC CCGTCGTTTT GCTGGGCACA
TTCGGCGTTC TTGCGTTGTT TGGCTATTCG ATTAATACCC TGACGTTGTT TGCAATGGTG
CTGGCGATCG GCTTGCTGGT GGACGATGCC ATTGTGGTGG TAGAGAACGT CGAACGCATT
ATGCGTGACG AAGGGTTGCC CGCGCGTGAA GCCACGGAAA AATCAATGGG CGAGATTTCT
GGCGCACTGG TTGCCATTGC GCTGGTGTTG TCAGCCGTAT TCCTGCCGAT GGCCTTCTTT
GGGGGATCTA CGGGCGTAAT TTATCGTCAG TTCTCCATCA CCATCATCTC CGCAATGCTG
CTTTCCGTGG TGGTGGCATT GACCTTGACT CCCGCCCTGT GCGGTTCCGT CCTCCAGCAT
GTTCCGCCAC ATAAAAAAGG CTTTTTCGGC GCATTTAACC GCTTTTACCG CCGTACTGAA
GATAAATATC AGCGAGGCGT AATTTATGTC CTGCGCCGTG CAGCCCGAAC GATGGGGCTT
TATGTCGTGC TGGGTGGTGG AATGGCCCTG ATGATGTGGA AACTGCCCGG CAGTTTCTTA
CCCACTGAAG ACCAGGGCGA AATCATGGTG CAGTACACGC TGCCGGCCGG GGCGACCGCT
GCCCGTACAG CAGAAGTGAA TCGCCAGATT GTTGACTGGT TCCTGATTAA CGAGAAAGCA
AATACCGATG TCATCTTTAC CGTTGATGGT TTCAGTTTTA GCGGCAGCGG ACAGAACACC
GGGATGGCGT TTGTTTCGTT GAAAAACTGG TCTCAACGTA AAGGGGCAGA AAACACCGCC
CAGGCTATCG CCCTACGGGC AACCAAAGAG CTGGGCACAA TTCGTGATGC GACGGTATTT
GCGATGACGC CGCCAGCCGT TGATGGGCTG GGGCAAAGCA ATGGTTTTAC GTTTGAATTG
TTAGCTAACG GTGGAACCGA TCGTGAAACA CTGCTGCAAA TGCGTAATCA GTTGATAGAA
AAAGCGAATC AAAGTCCGGA GTTACATTCT GTACGCGCCA ATGATTTGCC ACAAATGCCG
CAATTGCAGG TAGATATTGA TAGCAATAAA GCGGTGTCAT TAGGGTTGAG TTTGAATGAT
GTCACCGACA CCCTGTCCAG TGCGTGGGGC GGTACTTATG TGAATGACTT TATTGACCGT
GGTCGTGTGA AAAAAGTCTA CATTCAGGGC GACAGCGAAT TTCGTTCCGC GCCGTCAGAC
TTAGGTAAAT GGTTTGTGCG CGGTAGCGAT AACGCTATGA CACCATTCTC TGCTTTTGCG
ACCACCCGCT GGCTGTATGG ACCGGAAAGA CTGGTGCGCT ACAACGGCTC GGCAGCCTAT
GAAATTCAGG GCGAAAACGC GACTGGCTTT AGTTCCGGCG ATGCAATGAC AAAAATGGAG
GAACTGGCAA ACAGTCTTCC TGCGGGAACA ACCTGGGCCT GGAGTGGTTT GTCATTGCAG
GAGAAACTGG CCAGCGGTCA GGCATTAAGT CTGTATGCAG TTTCTATTCT GGTGGTTTTC
CTCTGCCTTG CAGCACTGTA CGAAAGCTGG TCAGTCCCGT TCTCGGTCAT TCTGGTGATC
CCTCTGGGGC TTCTTGGCGC GGCGCTGGCG GCCTGGATGC GTGATTTAAA CAACGACGTT
TACTTCCAGG TAGCGCTATT AACTACTATC GGCTTGTCAT CGAAAAACGC CATTCTGATT
GTGGAATTTG CTGAAGCGGC GGTTGCAGAG GGCTATTCCT TGAGTCGTGC GGCATTACGC
GCGGCGCAGA CTCGTTTACG CCCAATCATC ATGACCTCGC TGGCGTTTAT TGCGGGGGTA
ATGCCGCTGG CGATAGCAAC TGGCGCAGGG GCGAACAGCC GCATCGCCAT TGGTACGGGC
ATTATTGGCG GCACGCTGAC CGCTACATTA CTGGCCATTT TCTTCGTTCC TCTGTTTTTT
GTACTGGTGA AACGTTTGTT TGCCGGTAAA CCGCGCCGTC AGGAGTAA
 
Protein sequence
MFSRFFVRRP VFAWVIAILI MLAGILAIRT LPVAQYPDVA PPTIKISATY TGASAETLEN 
SVTQVIEQQL TGLDNLLYFS STSSSDGSVS INVTFEQGTD PDTAQVQVQN KIQQAESRLP
SEVQQTGVTV EKSQSNFLLI AAVYDTTDKA SSSDIADWLV SNVQDPLARV EGVGSLQVFG
AEYAMRIWLD PAKLASYSLM PSDVQSAIEA QNVQVTAGKI GALPSPNTQQ LTATVRAQSR
LQTVDQFKNI IVKSQSDGAV VRIKDVARVE MGSEDYTAIG KLNGHPSAGV AVMLSPGANA
LNTATLVKDK IAEFQRNMPQ GYDIAYPKDS TEFIKISVED VIQTLFEAIV LVVCVMYLFL
QNLRATLIPA LAVPVVLLGT FGVLALFGYS INTLTLFAMV LAIGLLVDDA IVVVENVERI
MRDEGLPARE ATEKSMGEIS GALVAIALVL SAVFLPMAFF GGSTGVIYRQ FSITIISAML
LSVVVALTLT PALCGSVLQH VPPHKKGFFG AFNRFYRRTE DKYQRGVIYV LRRAARTMGL
YVVLGGGMAL MMWKLPGSFL PTEDQGEIMV QYTLPAGATA ARTAEVNRQI VDWFLINEKA
NTDVIFTVDG FSFSGSGQNT GMAFVSLKNW SQRKGAENTA QAIALRATKE LGTIRDATVF
AMTPPAVDGL GQSNGFTFEL LANGGTDRET LLQMRNQLIE KANQSPELHS VRANDLPQMP
QLQVDIDSNK AVSLGLSLND VTDTLSSAWG GTYVNDFIDR GRVKKVYIQG DSEFRSAPSD
LGKWFVRGSD NAMTPFSAFA TTRWLYGPER LVRYNGSAAY EIQGENATGF SSGDAMTKME
ELANSLPAGT TWAWSGLSLQ EKLASGQALS LYAVSILVVF LCLAALYESW SVPFSVILVI
PLGLLGAALA AWMRDLNNDV YFQVALLTTI GLSSKNAILI VEFAEAAVAE GYSLSRAALR
AAQTRLRPII MTSLAFIAGV MPLAIATGAG ANSRIAIGTG IIGGTLTATL LAIFFVPLFF
VLVKRLFAGK PRRQE