Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1835 |
Symbol | eefB |
ID | 6146082 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 1856505 |
End bp | 1859612 |
Gene Length | 3108 bp |
Protein Length | 1035 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641616711 |
Product | multidrug efflux transport protein EefB |
Protein accession | YP_001743889 |
Protein GI | 170683789 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.000000299016 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTTTCGC GCTTTTTTGT TCGCCGCCCG GTCTTTGCCT GGGTTATCGC CATTTTGATT ATGTTGGCGG GGATTCTGGC TATTCGCACA TTACCCGTCG CGCAATATCC TGACGTTGCA CCGCCGACCA TTAAAATTTC AGCCACTTAT ACTGGTGCTT CTGCCGAAAC GCTGGAGAAC AGCGTGACTC AGGTTATCGA GCAACAACTC ACTGGGCTTG ATAATTTACT CTATTTCAGC TCAACCAGTA GCTCTGATGG TTCGGTCAGT ATTAATGTGA CCTTTGAACA AGGTACCGAT CCAGATACTG CACAGGTTCA GGTGCAGAAT AAAATTCAGC AGGCGGAGTC GCGCCTACCC AGCGAAGTGC AGCAAACGGG TGTTACGGTG GAGAAATCAC AAAGCAACTT TTTGCTGATT GCTGCCGTGT ATGACACCAC TGACAAAGCC TCCAGTTCGG ATATCGCCGA CTGGTTGGTC AGTAACGTTC AGGACCCGCT GGCGCGTGTT GAAGGTGTGG GGAGTCTGCA AGTCTTTGGC GCGGAATACG CTATGCGCAT CTGGCTTGAC CCGGCCAAAC TGGCGTCTTA CTCGCTAATG CCTTCAGACG TGCAAAGTGC TATTGAAGCG CAAAACGTGC AGGTTACTGC CGGGAAAATA GGGGCATTGC CTTCACCGAA TACTCAGCAA CTGACCGCAA CGGTACGTGC GCAGTCTCGC TTGCAGACGG TGGATCAGTT CAAAAATATT ATCGTGAAAA GCCAGTCAGA CGGCGCAGTT GTTCGTATAA AAGATGTGGC TCGCGTTGAG ATGGGCAGTG AAGATTATAC CGCTATCGGC AAACTTAACG GTCACCCGTC TGCCGGGGTT GCTGTAATGC TTTCGCCCGG TGCGAATGCG CTGAATACGG CGACGCTGGT CAAGGATAAG ATTGCCGAAT TCCAGCGGAA CATGCCGCAG GGATACGACA TCGCATACCC GAAAGACAGC ACTGAATTTA TTAAAATCTC CGTAGAGGAC GTAATTCAGA CGCTGTTTGA AGCCATCGTA TTGGTGGTTT GCGTGATGTA TTTATTCCTG CAAAACCTGC GTGCCACACT GATTCCGGCG TTAGCTGTCC CCGTCGTTTT GCTGGGCACA TTCGGCGTTC TTGCGTTGTT TGGCTATTCG ATTAATACCC TGACGTTGTT TGCAATGGTG CTGGCGATCG GCTTGCTGGT GGACGATGCC ATTGTGGTGG TAGAGAACGT CGAACGCATT ATGCGTGACG AAGGGTTGCC CGCGCGTGAA GCCACGGAAA AATCAATGGG CGAGATTTCT GGCGCACTGG TTGCCATTGC GCTGGTGTTG TCAGCCGTAT TCCTGCCGAT GGCCTTCTTT GGGGGATCTA CGGGCGTAAT TTATCGTCAG TTCTCCATCA CCATCATCTC CGCAATGCTG CTTTCCGTGG TGGTGGCATT GACCTTGACT CCCGCCCTGT GCGGTTCCGT CCTCCAGCAT GTTCCGCCAC ATAAAAAAGG CTTTTTCGGC GCATTTAACC GCTTTTACCG CCGTACTGAA GATAAATATC AGCGAGGCGT AATTTATGTC CTGCGCCGTG CAGCCCGAAC GATGGGGCTT TATGTCGTGC TGGGTGGTGG AATGGCCCTG ATGATGTGGA AACTGCCCGG CAGTTTCTTA CCCACTGAAG ACCAGGGCGA AATCATGGTG CAGTACACGC TGCCGGCCGG GGCGACCGCT GCCCGTACAG CAGAAGTGAA TCGCCAGATT GTTGACTGGT TCCTGATTAA CGAGAAAGCA AATACCGATG TCATCTTTAC CGTTGATGGT TTCAGTTTTA GCGGCAGCGG ACAGAACACC GGGATGGCGT TTGTTTCGTT GAAAAACTGG TCTCAACGTA AAGGGGCAGA AAACACCGCC CAGGCTATCG CCCTACGGGC AACCAAAGAG CTGGGCACAA TTCGTGATGC GACGGTATTT GCGATGACGC CGCCAGCCGT TGATGGGCTG GGGCAAAGCA ATGGTTTTAC GTTTGAATTG TTAGCTAACG GTGGAACCGA TCGTGAAACA CTGCTGCAAA TGCGTAATCA GTTGATAGAA AAAGCGAATC AAAGTCCGGA GTTACATTCT GTACGCGCCA ATGATTTGCC ACAAATGCCG CAATTGCAGG TAGATATTGA TAGCAATAAA GCGGTGTCAT TAGGGTTGAG TTTGAATGAT GTCACCGACA CCCTGTCCAG TGCGTGGGGC GGTACTTATG TGAATGACTT TATTGACCGT GGTCGTGTGA AAAAAGTCTA CATTCAGGGC GACAGCGAAT TTCGTTCCGC GCCGTCAGAC TTAGGTAAAT GGTTTGTGCG CGGTAGCGAT AACGCTATGA CACCATTCTC TGCTTTTGCG ACCACCCGCT GGCTGTATGG ACCGGAAAGA CTGGTGCGCT ACAACGGCTC GGCAGCCTAT GAAATTCAGG GCGAAAACGC GACTGGCTTT AGTTCCGGCG ATGCAATGAC AAAAATGGAG GAACTGGCAA ACAGTCTTCC TGCGGGAACA ACCTGGGCCT GGAGTGGTTT GTCATTGCAG GAGAAACTGG CCAGCGGTCA GGCATTAAGT CTGTATGCAG TTTCTATTCT GGTGGTTTTC CTCTGCCTTG CAGCACTGTA CGAAAGCTGG TCAGTCCCGT TCTCGGTCAT TCTGGTGATC CCTCTGGGGC TTCTTGGCGC GGCGCTGGCG GCCTGGATGC GTGATTTAAA CAACGACGTT TACTTCCAGG TAGCGCTATT AACTACTATC GGCTTGTCAT CGAAAAACGC CATTCTGATT GTGGAATTTG CTGAAGCGGC GGTTGCAGAG GGCTATTCCT TGAGTCGTGC GGCATTACGC GCGGCGCAGA CTCGTTTACG CCCAATCATC ATGACCTCGC TGGCGTTTAT TGCGGGGGTA ATGCCGCTGG CGATAGCAAC TGGCGCAGGG GCGAACAGCC GCATCGCCAT TGGTACGGGC ATTATTGGCG GCACGCTGAC CGCTACATTA CTGGCCATTT TCTTCGTTCC TCTGTTTTTT GTACTGGTGA AACGTTTGTT TGCCGGTAAA CCGCGCCGTC AGGAGTAA
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Protein sequence | MFSRFFVRRP VFAWVIAILI MLAGILAIRT LPVAQYPDVA PPTIKISATY TGASAETLEN SVTQVIEQQL TGLDNLLYFS STSSSDGSVS INVTFEQGTD PDTAQVQVQN KIQQAESRLP SEVQQTGVTV EKSQSNFLLI AAVYDTTDKA SSSDIADWLV SNVQDPLARV EGVGSLQVFG AEYAMRIWLD PAKLASYSLM PSDVQSAIEA QNVQVTAGKI GALPSPNTQQ LTATVRAQSR LQTVDQFKNI IVKSQSDGAV VRIKDVARVE MGSEDYTAIG KLNGHPSAGV AVMLSPGANA LNTATLVKDK IAEFQRNMPQ GYDIAYPKDS TEFIKISVED VIQTLFEAIV LVVCVMYLFL QNLRATLIPA LAVPVVLLGT FGVLALFGYS INTLTLFAMV LAIGLLVDDA IVVVENVERI MRDEGLPARE ATEKSMGEIS GALVAIALVL SAVFLPMAFF GGSTGVIYRQ FSITIISAML LSVVVALTLT PALCGSVLQH VPPHKKGFFG AFNRFYRRTE DKYQRGVIYV LRRAARTMGL YVVLGGGMAL MMWKLPGSFL PTEDQGEIMV QYTLPAGATA ARTAEVNRQI VDWFLINEKA NTDVIFTVDG FSFSGSGQNT GMAFVSLKNW SQRKGAENTA QAIALRATKE LGTIRDATVF AMTPPAVDGL GQSNGFTFEL LANGGTDRET LLQMRNQLIE KANQSPELHS VRANDLPQMP QLQVDIDSNK AVSLGLSLND VTDTLSSAWG GTYVNDFIDR GRVKKVYIQG DSEFRSAPSD LGKWFVRGSD NAMTPFSAFA TTRWLYGPER LVRYNGSAAY EIQGENATGF SSGDAMTKME ELANSLPAGT TWAWSGLSLQ EKLASGQALS LYAVSILVVF LCLAALYESW SVPFSVILVI PLGLLGAALA AWMRDLNNDV YFQVALLTTI GLSSKNAILI VEFAEAAVAE GYSLSRAALR AAQTRLRPII MTSLAFIAGV MPLAIATGAG ANSRIAIGTG IIGGTLTATL LAIFFVPLFF VLVKRLFAGK PRRQE
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