| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1820 |
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| Symbol | gabT1 |
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| ID | 6143459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1839045 |
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| End bp | 1840310 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641616696 |
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| Product | 4-aminobutyrate transaminase |
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| Protein accession | YP_001743874 |
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| Protein GI | 170682308 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
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| TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 0.144249 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAACA ATGAATTCCA TCAGCGTCGT CTTTCTGCTA CCCCTCGCGG GGTTGGCGTG
ATGTGTAACT TCTTCGCCCA GTCGGCAGAA AACGCCATGC TGAAGGACGT AGAGGGCAAC
GAATACATCG ATTTCGCCGC AGGCATTGCG GTGCTGAATA CCGGGCATCG CCACCCTGAT
CTGGTCGCGG CGGTGGAGCA GCAATTGCAA CAGTTTACCC ACACGGCGTA TCAGATTGTG
CCGTACGAAA GCTACGTCAC CCTGGCGGAG AAAATCAACG CCCTTGCCCC GGTGAGCGGG
CAGGCTAAAA CTGCGTTCTT CACCACCGGT GCGGAAGCGG TGGAGAACGC GGTGAAAATC
GCCCGCGCCC ATACCGGACG CCCTGGCGTG ATTGCGTTTA GCGGCGGCTT CCACGGTCGT
ACATATATGA CCATGGCGCT GACCGGAAAG GTCGCGCCGT ACAAAATCGG CTTCGGCCCG
TTCCCCGGTT CGGTATATCA CGTACCTTAT CCGTCAGATT TACATGGCGT TTCAACGCAG
GACTCTCTCG ACGCCATCGA ACGCTTGTTT AAATCTGACA TTGAAGCGAA GCAGGTGGCG
GCGATTATTT TCGAACCGGT GCAGGGCGAA GGCGGTTTCA ACGTTGCACC AAAAGAGCTG
GTTGCCGCCA TTCGCCGCCT GTGCGACGAG CACGGCATTG TGATGATTGC CGATGAAGTG
CAAAGCGGCT TTGCGCGTAC CGGTAAACTG TTTGCCATGG ATCACTACGC CGATAAGCCG
GACTTAATGA CGATGGCGAA AAGCCTCGCG GGCGGCATGC CGCTTTCGGG CGTGGTCGGT
AACGCGAATA TTATGGACGC GCCCGCGCCG GGCGGGTTGG GTGGTACTTA CGCCGGGAAC
CCGCTGGCGG TGGCTGCCGC GCACGCTGTG CTCAACATTA TCGACAAAGA ATCACTCTGT
GAACGCGCGA ATCAACTGGG CCAGCGCCTG ACAAACACGT TGATTGATGC CAAAGAAAGC
GTTCCGGCCA TCGCGGCGGT ACGCGGTCTG GGGTCTATGA TTGCGGCAGA GTTTAACGAT
CCGCAAACGG GCGAGCCGTC AGCGGCGATT GCACAGAAAA TCCAGCAACG CGCGCTGGCG
CAGGGGCTGC TTCTGCTGAC CTGTGGCGCA TACGGCAACG TGATTCGTTT CCTGTATCCG
CTGACCATCC CGGATGCGCA ATTCGATGCG GCAATGAAAA TTTTGCAGGA TGCGCTGAAA
GATTAA
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| Protein sequence | MSNNEFHQRR LSATPRGVGV MCNFFAQSAE NAMLKDVEGN EYIDFAAGIA VLNTGHRHPD
LVAAVEQQLQ QFTHTAYQIV PYESYVTLAE KINALAPVSG QAKTAFFTTG AEAVENAVKI
ARAHTGRPGV IAFSGGFHGR TYMTMALTGK VAPYKIGFGP FPGSVYHVPY PSDLHGVSTQ
DSLDAIERLF KSDIEAKQVA AIIFEPVQGE GGFNVAPKEL VAAIRRLCDE HGIVMIADEV
QSGFARTGKL FAMDHYADKP DLMTMAKSLA GGMPLSGVVG NANIMDAPAP GGLGGTYAGN
PLAVAAAHAV LNIIDKESLC ERANQLGQRL TNTLIDAKES VPAIAAVRGL GSMIAAEFND
PQTGEPSAAI AQKIQQRALA QGLLLLTCGA YGNVIRFLYP LTIPDAQFDA AMKILQDALK
D
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