Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1733 |
Symbol | ydcT |
ID | 6142952 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 1737406 |
End bp | 1738419 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641616609 |
Product | ABC transporter, ATP-binding protein |
Protein accession | YP_001743787 |
Protein GI | 170680113 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0000000359777 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACGTACG CAGTGGAGTT TGACAACGTC TCACGGTTGT ACGGTGACGT GCGCGCAGTA GATGGCGTCA GTATTGCGAT AAAAGATGGT GAGTTCTTCT CTATGCTGGG GCCGTCCGGT TCCGGCAAAA CCACCTGCCT GCGCCTGATT GCTGGATTCG AACAACTTTC CGGCGGGGCT ATCTCTATCT TTGGTAAACC CGCCAGCAAT CTGCCACCGT GGGAGCGGGA CGTGAATACT GTCTTCCAGG ACTACGCGCT ATTTCCGCAT ATGTCGATTC TTGACAACGT CGCCTACGGG CTGATGGTCA AAGGCGTGGA TAAAAAACAG CGGCATGCGA TGGCGCAAGA GGCGCTGGAG AAAGTGGCGC TGGGTTTTGT TCAGCAACGT AAACCGTCAC AACTTTCTGG TGGTCAGCGC CAGCGGGTTG CTATCGCCAG AGCACTGGTG AATGAACCGC GCGTATTGCT GTTGGATGAA CCGCTCGGCG CACTGGATCT CAAATTGCGT GAGCAGATGC AGCTGGAACT GAAAAAACTG CAACAGTCTC TCGGTATCAC TTTTATCTTC GTTACCCACG ATCAGGGCGA AGCGTTATCG ATGTCCGATC GTGTGGCGGT TTTCAATAAT GGACGCATTG AGCAGGTCGA TTCCCCGCGC GATCTCTATA TGCGCCCGCG CACGCCGTTT GTTGCCGGGT TCGTTGGTAC ATCGAATGTT TTTGATGGAC TGATGGCAGA GAAACTTTGT GGCATGACGG GAAGCTTCGC CCTGCGACCG GAACATATCC GCCTCAACAC CCCTGGTGAA CTGCAGGCCA ATGGCACGAT CCAGGCGGTG CAATATCAGG GCGCGGCAAC TCGTTTTGAA CTGAAATTGA ACGGCGGTGA AAAACTGCTT GTGAGTCAGG CCAATATGAC AGGCGAAGAA CTGCCTGCCA CGCTCACGCC CGGACAACAG GTGATGGTTT CCTGGTCGCG TGATGTGATG GTGCCGCTGG TTGAGGAGAG GTGA
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Protein sequence | MTYAVEFDNV SRLYGDVRAV DGVSIAIKDG EFFSMLGPSG SGKTTCLRLI AGFEQLSGGA ISIFGKPASN LPPWERDVNT VFQDYALFPH MSILDNVAYG LMVKGVDKKQ RHAMAQEALE KVALGFVQQR KPSQLSGGQR QRVAIARALV NEPRVLLLDE PLGALDLKLR EQMQLELKKL QQSLGITFIF VTHDQGEALS MSDRVAVFNN GRIEQVDSPR DLYMRPRTPF VAGFVGTSNV FDGLMAEKLC GMTGSFALRP EHIRLNTPGE LQANGTIQAV QYQGAATRFE LKLNGGEKLL VSQANMTGEE LPATLTPGQQ VMVSWSRDVM VPLVEER
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