Gene EcSMS35_1733 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_1733 
SymbolydcT 
ID6142952 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp1737406 
End bp1738419 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content55% 
IMG OID641616609 
ProductABC transporter, ATP-binding protein 
Protein accessionYP_001743787 
Protein GI170680113 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0000000359777 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACGTACG CAGTGGAGTT TGACAACGTC TCACGGTTGT ACGGTGACGT GCGCGCAGTA 
GATGGCGTCA GTATTGCGAT AAAAGATGGT GAGTTCTTCT CTATGCTGGG GCCGTCCGGT
TCCGGCAAAA CCACCTGCCT GCGCCTGATT GCTGGATTCG AACAACTTTC CGGCGGGGCT
ATCTCTATCT TTGGTAAACC CGCCAGCAAT CTGCCACCGT GGGAGCGGGA CGTGAATACT
GTCTTCCAGG ACTACGCGCT ATTTCCGCAT ATGTCGATTC TTGACAACGT CGCCTACGGG
CTGATGGTCA AAGGCGTGGA TAAAAAACAG CGGCATGCGA TGGCGCAAGA GGCGCTGGAG
AAAGTGGCGC TGGGTTTTGT TCAGCAACGT AAACCGTCAC AACTTTCTGG TGGTCAGCGC
CAGCGGGTTG CTATCGCCAG AGCACTGGTG AATGAACCGC GCGTATTGCT GTTGGATGAA
CCGCTCGGCG CACTGGATCT CAAATTGCGT GAGCAGATGC AGCTGGAACT GAAAAAACTG
CAACAGTCTC TCGGTATCAC TTTTATCTTC GTTACCCACG ATCAGGGCGA AGCGTTATCG
ATGTCCGATC GTGTGGCGGT TTTCAATAAT GGACGCATTG AGCAGGTCGA TTCCCCGCGC
GATCTCTATA TGCGCCCGCG CACGCCGTTT GTTGCCGGGT TCGTTGGTAC ATCGAATGTT
TTTGATGGAC TGATGGCAGA GAAACTTTGT GGCATGACGG GAAGCTTCGC CCTGCGACCG
GAACATATCC GCCTCAACAC CCCTGGTGAA CTGCAGGCCA ATGGCACGAT CCAGGCGGTG
CAATATCAGG GCGCGGCAAC TCGTTTTGAA CTGAAATTGA ACGGCGGTGA AAAACTGCTT
GTGAGTCAGG CCAATATGAC AGGCGAAGAA CTGCCTGCCA CGCTCACGCC CGGACAACAG
GTGATGGTTT CCTGGTCGCG TGATGTGATG GTGCCGCTGG TTGAGGAGAG GTGA
 
Protein sequence
MTYAVEFDNV SRLYGDVRAV DGVSIAIKDG EFFSMLGPSG SGKTTCLRLI AGFEQLSGGA 
ISIFGKPASN LPPWERDVNT VFQDYALFPH MSILDNVAYG LMVKGVDKKQ RHAMAQEALE
KVALGFVQQR KPSQLSGGQR QRVAIARALV NEPRVLLLDE PLGALDLKLR EQMQLELKKL
QQSLGITFIF VTHDQGEALS MSDRVAVFNN GRIEQVDSPR DLYMRPRTPF VAGFVGTSNV
FDGLMAEKLC GMTGSFALRP EHIRLNTPGE LQANGTIQAV QYQGAATRFE LKLNGGEKLL
VSQANMTGEE LPATLTPGQQ VMVSWSRDVM VPLVEER