| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1613 |
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| Symbol | ynfE |
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| ID | 6147198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1603333 |
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| End bp | 1605759 |
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| Gene Length | 2427 bp |
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| Protein Length | 808 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641616489 |
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| Product | anaerobic dimethyl sulfoxide reductase, A subunit YnfE |
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| Protein accession | YP_001743667 |
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| Protein GI | 170682222 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases
[TIGR02166] anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 70 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAAAA ATGAACAAAT GGTGGGCATC AGCCGCAGAA CACTCGTTAA ATCTACCGCG
ATAGGTTCTC TGGCGCTGGC TGCAGGCGGT TTTTCTTTAC CGTTCACCCT GCGCAGTTCA
GCGGCAGCGG TACAACAGGC CAGCGAAAAA GTGGTCTGGG GTGCCTGTTC CGTCAACTGT
GGTAGCCGCT GTGCACTTCG TCTACATGTT AAAGATAATG AAGTCACTTG GGTGGAAACT
GACAACACCG GCAACGACGA GTATGGCAAT CAACAAGTAC GCGCCTGTTT GCGCGGTCGG
TCCATCCGTC GACGTATTAA TCATCCCGAT CGCTTGAATT ACCCAATGAA ACGCGTGGGC
AAACGTGGCG AAGGCAAATT CGAACGGATT AGCTGGGATG AAGCCCTGGA TACTATCGCC
AGTAGCCTGA AAAAAACCGT CGAACAATAT GGCAATGAGG CTGTATATAT TCAGTACTCT
TCAGGGATCG TTGGCGGCAA TATGACCCGC TCTTCACCAT CAGCCTCGGC GGTCAAACGC
CTGATGAACT GCTACGGCGG TTCACTCAAT CAGTATGGCT CCTACAGCAC CGCGCAAATT
TCCTGTGCCA TGCCCTACAC CTACGGCAGT AATGATGGCA ACAGCACCAC GGATATTGAA
AACAGCAAGC TGGTCGTGAT GTTTGGTAAC AACCCGGCAG AAACCCGCAT GAGCGGCGGT
GGCATCACTT ATCTTCTTGA AAAAGCACGC GAGAAATCGA ACGCAAAAAT GATTGTTATC
GATCCGCGAT ATACCGATAC GGCTGCTGGT CGTGAAGACG AATGGTTACC TATTCGCCCG
GGCACCGATG CCGCGCTGGT TGCGGGTATT GCCTGGGTAT TGATTAACGA AAATCTCGTT
GATCAACCTT TTCTCGATAA ATACTGCGTC GGCTATGACG AAAAAACCTT ACCCGCAGAT
GCACCAAAAA ATGGTCACTA TAAAGCCTAT ATTCTTGGTG AAGGTGATGA TAAAACAGCG
AAAACGCCGC AGTGGGCTTC GCAAATTACC GGTATCCCGG TGGACCGTAT CATCAAGCTG
GCTCGTGAAA TTGGCACAGC AAAACCCGCT TATATCTGCC AGGGCTGGGG GCCGCAACGC
CAGGCAAACG GTGAGCTGAC CGCACGCGCT ATTGCTATGT TGCCTATTTT GACGGGCAAT
GTCGGCATCA GCGGCGGAAA TAGTGGTGCG CGTGAATCGA CCTATACCAT TACCATAGAA
CGCCTACCGG TGCTGGATAA TCCGGTCAAA ACGTCAATCT CTTGCTTCAG CTGGACGGAT
GCTATCGATC ATGGCCCGCA AATGACGGCA ATCCGCGACG GTGTCCGGGG CAAAGATAAA
CTGGATGTGC CCATTAAGTT CATCTGGAAC TACGCGGGAA ATACCCTCGT TAATCAGCAT
TCTGACATCA ACAAAACGCA TGAAATTCTG CAGGACGAAT CGAAATGCGA AATGATTGTG
GTCATCGAAA ACTTTATGAC CTCATCGGCA AAATATGCCG ACATTCTGCT GCCAGACCTG
ATGACCGTTG AGCAGGAAGA TATTATTCCT AACGACTACG CCGGTAACAT GGGATATCTC
ATTTTCCTTC AGCCAGTCAC CAGCGAAAAA TTCGAACGCA AACCGATTTA CTGGATCCTG
AGTGAAGTCG CGAAACGTCT TGGACCTGAC GTCTATCAAA AGTTCACTGA AGGTCGCACT
CAGGAACAAT GGTTACAACA TCTGTACGCC AAAATGCTTG CCAAAGATCC GGCGTTACCG
TCTTACGACG AACTGAAAAA AATGGGTATC TATAAGCGTA AAGATCCCAA TGGTCATTTT
GTCGCCTACA AAGCATTTCG TGAGGACCCC GAGGCAAATC CACTTAAAAC GCCTTCCGGT
AAGATTGAAA TTTATTCCAA CAGGCTGGCG GAAATTGCCC GTACCTGGGA ACTGGAAAAA
GATGAAGTGA TAAGCCCATT GCCAGTTTAT GCCTCAACCT TTGAAGGCTG GGACTCCCCT
GAACGTAGAA CCTTCCCACT GCAACTGTTT GGTTTCCATT ACAAATCCCG TACTCACTCG
ACCTACGGCA ACATTGATGT CCTGAAGGCA GCCTGCCGTC AGGAGGTGTG GATCAACCCT
ATAGATGCAC AGAAACGTGG GATTGCCAAC GGCGATATGG TGCGGGTGTT TAACCATCGT
GGCGAAGTTC GGCTACCAGC CAAAGTGACA CCACGCATTC TCCCTGGAGT TAGTGCTATG
GGCCAGGGAG CCTGGCACGA GGCCAATATG TCTGGCGATA AAATCGACCA TGGCGGCTGT
GTGAATACGC TAACCACTCT GCGCCCTTCA CCACTGGCGA AGGGAAACCC GCAGCACACT
AATCTGGTCG AGATCGAAAA AATATAA
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| Protein sequence | MSKNEQMVGI SRRTLVKSTA IGSLALAAGG FSLPFTLRSS AAAVQQASEK VVWGACSVNC
GSRCALRLHV KDNEVTWVET DNTGNDEYGN QQVRACLRGR SIRRRINHPD RLNYPMKRVG
KRGEGKFERI SWDEALDTIA SSLKKTVEQY GNEAVYIQYS SGIVGGNMTR SSPSASAVKR
LMNCYGGSLN QYGSYSTAQI SCAMPYTYGS NDGNSTTDIE NSKLVVMFGN NPAETRMSGG
GITYLLEKAR EKSNAKMIVI DPRYTDTAAG REDEWLPIRP GTDAALVAGI AWVLINENLV
DQPFLDKYCV GYDEKTLPAD APKNGHYKAY ILGEGDDKTA KTPQWASQIT GIPVDRIIKL
AREIGTAKPA YICQGWGPQR QANGELTARA IAMLPILTGN VGISGGNSGA RESTYTITIE
RLPVLDNPVK TSISCFSWTD AIDHGPQMTA IRDGVRGKDK LDVPIKFIWN YAGNTLVNQH
SDINKTHEIL QDESKCEMIV VIENFMTSSA KYADILLPDL MTVEQEDIIP NDYAGNMGYL
IFLQPVTSEK FERKPIYWIL SEVAKRLGPD VYQKFTEGRT QEQWLQHLYA KMLAKDPALP
SYDELKKMGI YKRKDPNGHF VAYKAFREDP EANPLKTPSG KIEIYSNRLA EIARTWELEK
DEVISPLPVY ASTFEGWDSP ERRTFPLQLF GFHYKSRTHS TYGNIDVLKA ACRQEVWINP
IDAQKRGIAN GDMVRVFNHR GEVRLPAKVT PRILPGVSAM GQGAWHEANM SGDKIDHGGC
VNTLTTLRPS PLAKGNPQHT NLVEIEKI
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