Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1572 |
Symbol | rnfA |
ID | 6147091 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 1556314 |
End bp | 1556895 |
Gene Length | 582 bp |
Protein Length | 193 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641616449 |
Product | Na(+)-translocating NADH-quinone reductase subunit E |
Protein accession | YP_001743627 |
Protein GI | 170680993 |
COG category | [C] Energy production and conversion |
COG ID | [COG4657] Predicted NADH:ubiquinone oxidoreductase, subunit RnfA |
TIGRFAM ID | [TIGR01943] electron transport complex, RnfABCDGE type, A subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.218044 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 66 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGACT ACCTGTTACT GTTTGTCGGA ACTGTACTGG TCAATAACTT TGTACTGGTC AAGTTTCTCG GTCTCTGTCC GTTTATGGGG GTTTCCAAAA AGCTGGAAAC CGCGATGGGC ATGGGGCTGG CAACAACGTT TGTAATGACG CTGGCGTCTA TTTGCGCCTG GCTTATCGAT ACGTGGATTT TGATCCCGCT TAATCTGATT TACCTGCGCA CCCTGGCGTT TATTCTGGTG ATTGCTGTGG TTGTGCAGTT CACCGAGATG GTGGTGCGCA AAACCAGCCC GGTGCTTTAC CGTCTGCTGG GGATTTTTTT GCCGCTTATC ACCACCAATT GTGCAGTGCT CGGCGTGGCG TTGCTGAATA TCAATCTCGG GCACAATTTC TTGCAGTCGG CGCTGTACGG TTTTTCCGCC GCTGTCGGTT TCTCGCTGGT GATGGTGCTC TTCGCCGCCA TCCGCGAACG CCTCGCTGTG GCTGATGTCC CGGCACCTTT TCGCGGTAAT GCCATTGCGT TAATTACCGC AGGTCTTATG TCTCTGGCCT TTATGGGCTT TAGTGGTTTG GTGAAGTTGT AA
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Protein sequence | MTDYLLLFVG TVLVNNFVLV KFLGLCPFMG VSKKLETAMG MGLATTFVMT LASICAWLID TWILIPLNLI YLRTLAFILV IAVVVQFTEM VVRKTSPVLY RLLGIFLPLI TTNCAVLGVA LLNINLGHNF LQSALYGFSA AVGFSLVMVL FAAIRERLAV ADVPAPFRGN AIALITAGLM SLAFMGFSGL VKL
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