| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1534 |
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| Symbol | |
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| ID | 6146318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1518029 |
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| End bp | 1519402 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641616411 |
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| Product | multidrug efflux protein |
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| Protein accession | YP_001743589 |
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| Protein GI | 170682804 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00445038 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.00117159 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCAGAAGT ATATCAGTGA AGCGCGTCTG TTATTAGCAT TAGCAATCCC GGTGATTCTC
GCGCAAATCG CCCAAACTGC GATGGGTTTT GTCGATACCG TGATGGCGGG CGGCTATAGT
GCCACCGACA TGGCGGCGGT CGCTATCGGA ACTTCTATCT GGCTTCCGGC GATCCTCTTT
GGTCACGGAC TGCTGCTGGC ATTAACGCCG GTTATCGCGC AATTAAATGG CTCCGGTCGA
CGTGAGCGCA TTGCGCATCA GGTGCGACAA GGTTTCTGGC TGGCAGGTTT TGTTTCCGTT
CTCATTATGC TGGTGCTGTG GAATGCAGGC TACATTATCC GCTCCATGGA AAACATCGAT
CCGGCTCTGG CGGACAAAGC CGTGGGTTAT CTGCGTGCGT TGCTATGGGG CGCGCCGGGC
TATCTTTTCT TCCAGGTTGC CCGTAACCAG TGTGAAGGTC TGGCAAAAAC CAAGCCGGGT
ATGGTGATGG GCTTTATCGG CCTGCTGGTG AACATTCCGG TGAACTATAT CTTTATTTAT
GGTCATTTCG GTATGCCTGA GCTCGGTGGC GTTGGTTGTG GCGTGGCTAC TGCGGCGGTG
TATTGGGTCA TGTTCCTTGC CATGGTTTCT TACATTAAAC GCGCCCGCTC GATGCGCGAT
ATTCGTAACG AAAAAGGCAC CGCGAAGCCC GATCCTGCGG TTATGAAACG ACTGATTCAA
CTCGGTTTGC CAATTGCGCT GGCACTGTTC TTTGAAGTAA CGCTGTTTGC CGTCGTGGCT
CTGTTAGTGT CTCCGCTCGG TATTGTTGAT GTCGCAGGAC ATCAGATTGC CCTGAACTTT
AGTTCACTGA TGTTCGTGCT TCCCATGTCG CTGGCGGCAG CGGTAACTAT CCGCGTAGGT
TATCGTCTGG GTCAAGGCTC AACGCTGGAT GCGCAAACCG CTGCGCGGAC CGGGCTTATG
GTGGGTGTCT GTATGGCAAC CCTGACGGCC ATATTCACGG TTTCACTGCG AGAGCAAATC
GCCCTGTTGT ACAACGACAA TCCCGAGGTT GTAACGCTGG CTGCGCATTT GATGCTGCTG
GCGGCGGTAT ATCAGATTTC TGACTCTATC CAGGTGATTG GCAGTGGGAT TTTGCGTGGT
TATAAAGATA CACGTTCCAT TTTCTATATC ACCTTTACGG CTTACTGGGT GCTGGGCTTG
CCAAGCGGCT ATATTCTGGC ACTGACCGAT CTGGTCGTTG AACCTATGGG GCCAGCAGGC
TTCTGGATAG GCTTTATTAT TGGCCTGACT TCGGCAGCCA TTATGATGAT GCTGCGTATG
CGGTTCCTGC AACGTCTGCC GTCAGCCATC ATTCTGCAAC GAGCAGCTCG CTAG
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| Protein sequence | MQKYISEARL LLALAIPVIL AQIAQTAMGF VDTVMAGGYS ATDMAAVAIG TSIWLPAILF
GHGLLLALTP VIAQLNGSGR RERIAHQVRQ GFWLAGFVSV LIMLVLWNAG YIIRSMENID
PALADKAVGY LRALLWGAPG YLFFQVARNQ CEGLAKTKPG MVMGFIGLLV NIPVNYIFIY
GHFGMPELGG VGCGVATAAV YWVMFLAMVS YIKRARSMRD IRNEKGTAKP DPAVMKRLIQ
LGLPIALALF FEVTLFAVVA LLVSPLGIVD VAGHQIALNF SSLMFVLPMS LAAAVTIRVG
YRLGQGSTLD AQTAARTGLM VGVCMATLTA IFTVSLREQI ALLYNDNPEV VTLAAHLMLL
AAVYQISDSI QVIGSGILRG YKDTRSIFYI TFTAYWVLGL PSGYILALTD LVVEPMGPAG
FWIGFIIGLT SAAIMMMLRM RFLQRLPSAI ILQRAAR
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