Gene EcSMS35_1425 details

Gene Information

• Locus tag: EcSMS35_1425
• Symbol: sppA
• ID: 6146703
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli SMS-3-5
• Kingdom: Bacteria
• Replicon accession: NC_010498
• Strand: -
• Start bp: 1409620
• End bp: 1411488
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 641616303
• Product: protease 4
• Protein accession: YP_001743483
• Protein GI: 170683467
• COG category: [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0616] Periplasmic serine proteases (ClpP class)
• TIGRFAM ID: [TIGR00705] signal peptide peptidase SppA, 67K type; [TIGR00706] signal peptide peptidase SppA, 36K type

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.107145
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 48
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGGGAGAAT ACATGCGAAC CCTTTGGCGA TTTATTGCCG GATTTTTTAA ATGGACGTGG 
CGTCTGCTGA ATTTCGTCCG TGAAATGGTA CTTAACCTGT TCTTTATTTT TCTCGTGCTG 
GTTGGTGTGG GGATCTGGAT GCAGGTCAGT GGTGGTGATT CGAAAGAAAC GGCCAGTCGT 
GGCGCACTGC TGCTGGACAT TTCTGGTGTG ATCGTCGATA AACCCGACAG TTCTCAGCGG 
TTTAGTAAAT TAAGCCGCCA GCTGCTTGGT GCCAGTTCCG ATCGTCTGCA GGAAAACTCA 
CTGTTTGATA TCGTCAACAC CATTCGCCAG GCGAAGGACG ACCGCAATAT CACCGGTATC 
GTGATGGATC TGAAAAACTT CGCAGGCGGC GACCAGCCGT CTATGCAGTA CATCGGCAAA 
GCCCTGAAAG AGTTTCGTGA CAGCGGGAAA CCGGTTTATG CCGTTGGCGA GAACTACAGC 
CAGGGGCAAT ATTATCTCGC CAGTTTCGCC AATAAAATTT GGCTGTCACC GCAAGGCGTG 
GTGGATCTGC ACGGTTTTGC CACCAACGGT CTGTACTACA AATCGTTACT GGATAAGCTG 
AAAGTTTCCA CCCATGTGTT CCGCGTGGGT ACGTATAAAT CTGCCGTTGA ACCGTTTATT 
CGTGATGATA TGTCACCGGC AGCCCGCGAA GCTGACAGCC GCTGGATTGG TGAGCTGTGG 
CAAAACTATC TGAATACTGT TGCCGCTAAC CGGCAGATCC CTGCTCAGCA GGTATTCCCT 
GGCGCGCAAG GGTTGCTTGA GGGTTTAACC AAAACCGGTG GCGATACCGC GAAATATGCG 
CTGGAAAACA AGCTGGTCGA TGCACTGGCA TCGAGTGCCG AAATCGAAAA AGCTCTGACC 
AAAGAGTTCG GCTGGAGTAA GACTGATAAA AATTATCGCG CCATCAGTTA TTACGATTAC 
GCATTGAAAA CGCCGGCAGA TACCGGTGAC AGCATCGGAG TCGTCTTCGC TAATGGCGCA 
ATTATGGATG GCGAGGAAAC TCAGGGGAAT GTTGGCGGTG ATACCACTGC GGCACAAATC 
CGCGACGCTC GCCTTGACCC GAAAGTGAAA GCGATTGTTC TGCGTGTTAA TAGTCCCGGC 
GGCAGCGTTA CTGCGTCTGA AGTGATTCGC GCTGAACTGG CAGCAGCCCG GGCAGCGGGT 
AAGCCTGTGG TTGTGTCGAT GGGCGGTATG GCGGCATCTG GTGGTTACTG GATTTCCACA 
CCAGCTAATT ACATTGTGGC TAACCCCAGC ACCCTGACCG GTTCTATCGG TATCTTCGGC 
GTGATCACCA CCGTAGAAAA TAGTCTGGAT TCGATTGGTG TTCATACTGA TGGTGTCTCA 
ACTTCACCGC TGGCGGATGT TTCTATCACC AGGGCACTGC CGCCGGAAGC ACAGCAGATG 
ATGCAGTTAA GCATTGAGAA TGGCTATAAA CGCTTTATCA CGCTGGTTGC TGATGCGCGT 
CATTCAACGC CAGAGCAGAT TGATAAAATC GCCCAGGGCC ACGTCTGGAC CGGCCAGGAT 
GCAAAAGCTA ACGGGCTGGT CGATAGTCTC GGGGATTTCG ATGATGCGGT CGCCAAAGCA 
GCAGAGCTGG CAAAAGTGAA ACAGTGGCAT CTGGAATACT ACGTTGATGA ACCGACCTTC 
TTCGACAAAG TGATGGACAA CATGTCTGGT TCTGTCCGGG CAATGTTGCC AGATGCGTTC 
CAGGCCATGT TACCTGCACC GCTGGCCTCG GTAGCCTCTA CCGTTAAAAG TGAAAACGAC 
AAGCTGGCCG CGTTTAACGA CCCACAAAAC CGTTATGCGT TTTGCCTGAC CTGCGCCAAC 
GTGCGTTAA 

 

Protein sequence

MGEYMRTLWR FIAGFFKWTW RLLNFVREMV LNLFFIFLVL VGVGIWMQVS GGDSKETASR 
GALLLDISGV IVDKPDSSQR FSKLSRQLLG ASSDRLQENS LFDIVNTIRQ AKDDRNITGI 
VMDLKNFAGG DQPSMQYIGK ALKEFRDSGK PVYAVGENYS QGQYYLASFA NKIWLSPQGV 
VDLHGFATNG LYYKSLLDKL KVSTHVFRVG TYKSAVEPFI RDDMSPAARE ADSRWIGELW 
QNYLNTVAAN RQIPAQQVFP GAQGLLEGLT KTGGDTAKYA LENKLVDALA SSAEIEKALT 
KEFGWSKTDK NYRAISYYDY ALKTPADTGD SIGVVFANGA IMDGEETQGN VGGDTTAAQI 
RDARLDPKVK AIVLRVNSPG GSVTASEVIR AELAAARAAG KPVVVSMGGM AASGGYWIST 
PANYIVANPS TLTGSIGIFG VITTVENSLD SIGVHTDGVS TSPLADVSIT RALPPEAQQM 
MQLSIENGYK RFITLVADAR HSTPEQIDKI AQGHVWTGQD AKANGLVDSL GDFDDAVAKA 
AELAKVKQWH LEYYVDEPTF FDKVMDNMSG SVRAMLPDAF QAMLPAPLAS VASTVKSEND 
KLAAFNDPQN RYAFCLTCAN VR