| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1387 |
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| Symbol | |
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| ID | 6143964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1375452 |
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| End bp | 1377062 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641616265 |
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| Product | putative transporter |
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| Protein accession | YP_001743445 |
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| Protein GI | 170681413 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.216138 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAGCA ATGTTAAGAA AAAAGATGTG CCGCTGATAA GCATCAGTCT GGTGGCCATT
CTTTTCATCG CAGCTGCATT AAGCCTTTTC CCACAACAAT CGGCCGACGC GGCCAACGCT
ATATACACTT TTGTTACGCG TACGTTAGGT TCCGCCGTAC AGGTATTGGT TTTGCTGGCA
ATGGGACTGG TGATTTATTT AGCCACCAGT AAATACGGCA ATATTCGTCT TGGCGAAGGA
AAACCGGAAT ACAGCACGCT CTCCTGGCTG TTTATGTTTA TTTGTGCCGG TTTAGGTTCT
TCTACGCTTT ATTGGGGGGT TGCTGAATGG GCCTATTATT ATCAAACACC TGGATTAAAT
ATCGCACCGC GTTCACAACA GGCACTCGAA TTTAGCGTCC CTTACTCCTT CTTCCACTGG
GGCATCAGCG CCTGGGCAAC TTATACGCTG GCCTCATTAA TCATGGCTTA TCACTTTCAT
GTGCGGAAAA ACAAAGGTCT GAGTCTTTCC GGCATTATTG CCGCGATTAC CGGCGTTCGC
CCGCAAGGCC CGTGGGGAAA ACTGGTCGAT TTGATGTTCC TGATCGCCAC TGTCGGCGCA
CTGACCATTT CCCTTGTTGT CACCGCAGCA ACCTTTACCC GTGGGCTTTC CGCGCTGACC
GGTTTACCCG ATAATTTCAC CGTGCAGGCA TTTGTGATCC TGCTTTCCGG CGGCATTTTT
TGCCTAAGCT CATGGATTGG TATCAACAAC GGTTTGCAAC GTCTGAGCAA AATGGTTGGC
TGGGGCGCGT TCCTGCTGCC ATTACTGGTG CTCATTGTCG GCCCAACCGA ATTTATTACC
AACAGCATCA TCAATGCCAT CGGCCTGACC ACGCAAAACT TCCTGCAAAT GAGCTTATTC
ACCGATCCGC TTGGCGATGG TTCATTTACC CGCAACTGGA CCGTTTTCTA CTGGCTGTGG
TGGATCTCAT ACACCCCTGG CGTAGCAATG TTTGTCACCC GCGTTTCCCG CGGTCGTAAG
ATTAAAGAAG TTATCTGGGG ACTGATCCTC GGCAGCACCG TCGGTTGCTG GTTCTTCTTC
GGCGTAATGG AAAGCTATGC CATTCACCAG TTTATCAATG GCGTAATCAA CGTCCCACAG
GTGCTGGAAA CACTGGGCGG CGAGACAGCT GTGCAGCAAG TTCTGATGTC GTTGCCAGCC
GGTAAATTGT TCCTCGCCGC ATACCTGGGC GTGATGATTA TTTTCCTTGC CTCGCATATG
GATGCAGTGG CCTACACCAT GGCGGCGACC AGTACGCGTA ATCTCCAGGA AGGTGACGAT
CCTGACCGTG GGCTGCGTCT TTTCTGGTGC GTGGTAATTA CCCTGATCCC GCTTTCAATT
CTTTTCACTG GCGCGTCGCT GGAAACGATG AAAACCACCG TCGTACTCAC AGCCCTTCCG
TTCCTCGTCA TTTTACTGGT GAAAGTCGGC GGATTTATTC GCTGGCTGAA ACAGGATTAC
GCCGACATTC CGGCTCATCA AGTTGAATAT TATCTCCCGC AGACACCGGT TGAAGCCCTG
GAAAAAACAC CAGTGCTCCC TGCGGGAACC GTATTCAAAG GCGACAACTG A
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| Protein sequence | MMSNVKKKDV PLISISLVAI LFIAAALSLF PQQSADAANA IYTFVTRTLG SAVQVLVLLA
MGLVIYLATS KYGNIRLGEG KPEYSTLSWL FMFICAGLGS STLYWGVAEW AYYYQTPGLN
IAPRSQQALE FSVPYSFFHW GISAWATYTL ASLIMAYHFH VRKNKGLSLS GIIAAITGVR
PQGPWGKLVD LMFLIATVGA LTISLVVTAA TFTRGLSALT GLPDNFTVQA FVILLSGGIF
CLSSWIGINN GLQRLSKMVG WGAFLLPLLV LIVGPTEFIT NSIINAIGLT TQNFLQMSLF
TDPLGDGSFT RNWTVFYWLW WISYTPGVAM FVTRVSRGRK IKEVIWGLIL GSTVGCWFFF
GVMESYAIHQ FINGVINVPQ VLETLGGETA VQQVLMSLPA GKLFLAAYLG VMIIFLASHM
DAVAYTMAAT STRNLQEGDD PDRGLRLFWC VVITLIPLSI LFTGASLETM KTTVVLTALP
FLVILLVKVG GFIRWLKQDY ADIPAHQVEY YLPQTPVEAL EKTPVLPAGT VFKGDN
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