Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1384 |
Symbol | rnd |
ID | 6144868 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 1372101 |
End bp | 1373228 |
Gene Length | 1128 bp |
Protein Length | 375 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641616262 |
Product | ribonuclease D |
Protein accession | YP_001743442 |
Protein GI | 170680016 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0737977 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 0.865883 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAATTACC AAATGATTAC CACGGACGAT GCGCTGGCTT CTTTGTGTGA AGCCGTCCGT GCCTTTCCGG CGATAGCCCT GGATACTGAA TTTGTTCGTA CGCGCACCTA TTACCCGCAG CTAGGTCTAA TTCAACTTTT TGATGGTGAG CATCTGGCGC TAATTGATCC TCTCGGGATC TCCGACTGGT CACCACTGAA AGCGATCCTG CGCGATCCGT CCATCACAAA ATTTCTCCAT GCGGGCAGTG AAGATCTGGA AGTGTTCCTC AATGTCTTTG GCGAATTACC ACAACCCCTG ATTGACACGC AAATCCTTGC TGCCTTCTGC GGACGCCCGA TGTCATGGGG TTTTGCTTCC ATGGTGGAAG AGTATTCCGG CGTTACGCTG GACAAGAGTG AATCGCGCAC CGACTGGCTG GCCAGACCGC TGACCGAACG TCAGTGTGAA TACGCAGCGG CGGATGTCTG GTATTTGTTA CCGATCACCG CCAAGCTTAT GGTAGAAACG GAGGCCTCCG GCTGGCTACC TGCGGCGCTG GATGAATGCC GCCTGATGCA AATGCGTCGT CAGGAAGTCG TTGCGCCGGA AGATGCCTGG CGTGATATCA CCAATGCCTG GCAGTTACGC ACACGCCAAC TGGCCTGTCT GCAACTGTTA GCCGATTGGC GACTGCGCAA GGCGCGGGAG CGCGATCTGG CAGTGAACTT TGTCGTGCGT GAAGAGCATT TGTGGTCTGT AGCGCGTTAT ATGCCGGGAA GTTTAGGCGA ACTGGACAGC CTGGGTTTAT CCGGTAGCGA AATCCGCTTT CACGGTAAAA CGCTGCTGGC GCTGGTGGAA AAAGCGCAGA CATTGCCGGA AGAGGCCTTA CCGCAGCCGA TGCTTAACCT GATGGACATG CCGGGTTATC GTAAAGCGTT TAAAGCGATT AAGTCGCTGA TTACTGACGT GAGCGAAACG CACAAGATCA GCGCCGAATT GCTGGCATCG CGTCGGCAAA TCAACCAACT GCTGAACTGG CACTGGAAAC TGAAACCGCA GAACAATTTG CCGGAGCTGA TTTCCGGCTG GCGTGGTGAG CTGATGGCGG AAGCATTACA CAATTTATTG CAGGAATATC CGCAGTAA
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Protein sequence | MNYQMITTDD ALASLCEAVR AFPAIALDTE FVRTRTYYPQ LGLIQLFDGE HLALIDPLGI SDWSPLKAIL RDPSITKFLH AGSEDLEVFL NVFGELPQPL IDTQILAAFC GRPMSWGFAS MVEEYSGVTL DKSESRTDWL ARPLTERQCE YAAADVWYLL PITAKLMVET EASGWLPAAL DECRLMQMRR QEVVAPEDAW RDITNAWQLR TRQLACLQLL ADWRLRKARE RDLAVNFVVR EEHLWSVARY MPGSLGELDS LGLSGSEIRF HGKTLLALVE KAQTLPEEAL PQPMLNLMDM PGYRKAFKAI KSLITDVSET HKISAELLAS RRQINQLLNW HWKLKPQNNL PELISGWRGE LMAEALHNLL QEYPQ
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