| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1383 |
|---|
| Symbol | fadD |
|---|
| ID | 6147374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 1370346 |
|---|
| End bp | 1372031 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641616261 |
|---|
| Product | long-chain-fatty-acid--CoA ligase |
|---|
| Protein accession | YP_001743441 |
|---|
| Protein GI | 170680693 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0924473 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 0.838722 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAGAAGG TTTGGCTTAA CCGTTATCCC GCGGACGTTC CGACGGAGAT CAACCCTGAC
CGTTATCAAT CTCTGGTAGA TATGTTTGAG CAGTCGGTCG CGCGCTACGC CGATCAACCC
GCGTTTGTGA ATATGGGGGA GGTGATGACC TTCCGCAAAC TGGAAGAACG CAGTCGCGCG
TTTGCCGCTT ATTTGCAACA AGGGTTGGGA CTGAAGAAAG GCGATCGCGT TGCGTTGATG
ATGCCTAATT TATTGCAATA TCCGGTGGCG CTGTTTGGCA TTTTGCGTGC CGGGATGATT
GTCGTAAACG TTAACCCGTT GTATACCCCG CGTGAACTTG AGCATCAGCT TAACGATAGC
GGCGCATCGG CGATTGTTAT CGTGTCTAAC TTTGCCCACA CTCTGGAAAA AGTGGTTGAT
AAAACCGCCG TTCAGCACGT AATTCTGACC CGTATGGGCG ATCAGCTATC TACGGCAAAA
GGCACGGTAG TCAATTTCGT TGTTAAATAC ATCAAGCGTC TGGTGCCGAA ATACCATCTG
CCAGATGCCA TTTCATTTCG TAGCGCCCTG CACAACGGCT ACCGGATGCA GTACGTCAAA
CCCGAACTGG TGCCGGAAGA TTTAGCTTTC CTGCAATACA CCGGCGGTAC CACTGGTGTG
GCGAAAGGCG CGATGCTGAC TCACCGCAAT ATGCTGGCGA ACCTGGAACA GGTTAACGCG
ACCTATGGTC CGCTGTTGCA TCCGGGCAAA GAGCTGGTGG TGACGGCGCT GCCGCTGTAT
CACATTTTTG CACTGACCAT TAACTGCCTG CTGTTTATCG AACTGGGGGG GCAGAACCTG
CTTATCACTA ACCCGCGCGA TATTCCAGGG TTGGTAAAAG AGTTAGCGAA ATATCCGTTT
ACCGCTATCA CTGGCGTTAA CACCTTGTTC AATGCGTTGC TGAACAATAA AGAGTTCCAG
CAGCTGGATT TCTCCAGTCT GCATCTTTCC GCAGGCGGAG GGATGCCTGT TCAGCAAGTG
GTGGCAGAAC GTTGGGTGAA ACTGACTGGA CAGTATCTGC TGGAAGGTTA TGGCCTGACC
GAGTGTGCGC CGCTGGTGAG CGTTAACCCG TATGATATTG ATTATCATAG TGGTAGCATC
GGTTTGCCGG TGCCGTCGAC GGAAGCCAAA CTGGTGGATG ATGATGATAA TGAAGTACCA
CCTGGTCAAC CAGGTGAGCT TTGTGTCAAA GGACCGCAGG TGATGCTGGG TTACTGGCAG
CGTCCGGATG CTACCGATGA AATCATCAAA AATGGCTGGT TACACACCGG CGACATCGCG
GTGATGGATG AAGAAGGATT CCTGCGCATT GTCGATCGTA AAAAAGACAT GATTCTGGTT
TCCGGTTTTA ACGTCTATCC CAACGAGATT GAAGATGTCG TCATGCAGCA TCCTGGCGTA
CAGGAAGTCG CGGCTGTTGG CGTACCTTCC GGCTCTAGTG GTGAAGCGGT GAAAATCTTC
GTTGTGAAAA AAGATCCATC GCTTACCGAA GAGTCACTGG TGACTTTTTG CCGCCGTCAG
CTCACGGGCT ACAAAGTACC GAAGCTGGTG GAGTTTCGTG ATGAGTTACC GAAATCTAAC
GTCGGAAAAA TTTTGCGACG AGAATTACGT GACGAAGCGC GCGGCAAAGT GGACAATAAA
GCCTGA
|
|---|
| Protein sequence | MKKVWLNRYP ADVPTEINPD RYQSLVDMFE QSVARYADQP AFVNMGEVMT FRKLEERSRA
FAAYLQQGLG LKKGDRVALM MPNLLQYPVA LFGILRAGMI VVNVNPLYTP RELEHQLNDS
GASAIVIVSN FAHTLEKVVD KTAVQHVILT RMGDQLSTAK GTVVNFVVKY IKRLVPKYHL
PDAISFRSAL HNGYRMQYVK PELVPEDLAF LQYTGGTTGV AKGAMLTHRN MLANLEQVNA
TYGPLLHPGK ELVVTALPLY HIFALTINCL LFIELGGQNL LITNPRDIPG LVKELAKYPF
TAITGVNTLF NALLNNKEFQ QLDFSSLHLS AGGGMPVQQV VAERWVKLTG QYLLEGYGLT
ECAPLVSVNP YDIDYHSGSI GLPVPSTEAK LVDDDDNEVP PGQPGELCVK GPQVMLGYWQ
RPDATDEIIK NGWLHTGDIA VMDEEGFLRI VDRKKDMILV SGFNVYPNEI EDVVMQHPGV
QEVAAVGVPS GSSGEAVKIF VVKKDPSLTE ESLVTFCRRQ LTGYKVPKLV EFRDELPKSN
VGKILRRELR DEARGKVDNK A
|
|---|
| |