Gene EcSMS35_1270 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_1270 
SymboluvrC 
ID6142852 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp1264810 
End bp1266642 
Gene Length1833 bp 
Protein Length610 aa 
Translation table11 
GC content52% 
IMG OID641616148 
Productexcinuclease ABC subunit C 
Protein accessionYP_001743331 
Protein GI170680797 
COG category[L] Replication, recombination and repair 
COG ID[COG0322] Nuclease subunit of the excinuclease complex 
TIGRFAM ID[TIGR00194] excinuclease ABC, C subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.1646e-06 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.000709379 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGAGTGATC AGTTTGACGC AAAAGCGTTT TTAAAAACCG TAACCAGCCA GCCAGGCGTT 
TATCGCATGT ACGATGCTGG TGGTACGGTT ATCTATGTCG GCAAAGCGAA AGACCTGAAA
AAACGGCTTT CCAGCTATTT CCGTAGCAAC CTCGCTTCGC GCAAAACCGA AGCGCTGGTC
GCCCAGATCC AGCAAATTGA TGTAACGGTT ACTCATACAG AAACCGAAGC GCTGTTGCTG
GAACACAACT ACATCAAACT CTATCAGCCG CGTTACAACG TTTTGCTACG CGATGATAAA
TCATATCCTT TTATCTTCCT GAGTGGCGAT ACCCACCCGC GTCTGGCGAT GCATCGTGGT
GCAAAGCATG CCAAAGGTGA ATATTTCGGC CCGTTCCCGA ATGGCTATGC CGTACGTGAA
ACACTGGCGC TACTGCAAAA GATTTTCCCC ATTCGCCAGT GCGAAAACAG TGTTTATCGC
AATCGCTCGC GTCCGTGTCT GCAATATCAG ATAGGACGTT GTCTGGGGCC GTGCGTTGAA
GGACTGGTGA GTGAAGAAGA ATACGCTCAG CAGGTCGAGT ATGTGCGCCT GTTTTTGTCT
GGCAAAGATG ATCAGGTGCT TACGCAACTG ATTAGCCGTA TGGAAACTGC CAGCCAGAAT
CTGGAGTTTG AAGAAGCGGC ACGTATTCGC GACCAAATTC AGGCGGTGCG ACGCGTCACC
GAAAAACAGT TTGTGTCCAA TACCGGCGAC GACCTCGACG TTATTGGTGT GGCGTTCGAT
GCGGGCATGG CTTGTGTCCA CGTATTGTTC ATTCGTCAGG GCAAAGTGCT TGGCAGCCGC
AGCTATTTCC CGAAAGTGCC TGGCGGTACG GAACTGAGCG AGGTGGTGGA AACCTTCGTA
GGACAGTTCT ATTTACAAGG CAGCCAGATG CGCACCTTAC CGGGTGAGAT CCTGCTCGAT
TTTAATCTTA GCGATAAAAC GCTGCTCGCC GATTCCCTTT CAGAACTGGC GGGACGCAAG
ATTAATGTTC AAACCAAACC TCGCGGCGAT AGGGCGCGTT ATCTGAAACT CGCGCGCACC
AATGCGGCGA CGGCCTTAAC CAGCAAACTT TCGCAGCAAT CTACCGTTCA CCAGCGACTG
ACCGCGCTTG CCAGCGTGTT GAAATTGCCG GAAGTGAAGC GGATGGAGTG CTTTGACATC
AGCCATACCA TGGGTGAACA AACCGTCGCT TCCTGTGTGG TGTTTGATGC TAACGGCCCG
CTGCGTGCGG AGTATCGGCG CTATAACATT ACAGGCATCA GGCCGGGCGA TGATTATGCG
GCGATGAATC AGGTGCTGCG TCGGCGTTAT GGTAAAGCCA TTGACGACAG TAAGATCCCT
GATGTGATCC TTATCGACGG CGGCAAAGGC CAGCTTGCGC AGGCGAAAAA TGTCTTCGCC
GAACTGGATG TCTCATGGGA TAAAAATCAT CCGCTGCTAC TTGGCGTTGC CAAAGGAGCA
GATCGTAAGG CTGGGCTGGA AACGCTGTTC TTTGAGCCGG AAGGTGAGGG ATTTAGTTTG
CCGCCAGATT CTCCCGCGCT GCATGTTATC CAGCATATTC GCGATGAATC ACATGATCAC
GCGATTGGCG GGCACCGTAA AAAACGGGCG AAGGTCAAAA ATACCAGTTC CCTGGAAACC
ATTGAAGGCG TCGGGCCAAA ACGTCGGCAA ATGTTGTTGA AATATATGGG CGGTTTGCAA
GGTTTACGTA ACGCCAGCGT CGAGGAAATT GCAAAAGTGC CGGGTATTTC GCAAGGTCTG
GCAGAAAAGA TCTTCTGGTC GTTGAAACAT TGA
 
Protein sequence
MSDQFDAKAF LKTVTSQPGV YRMYDAGGTV IYVGKAKDLK KRLSSYFRSN LASRKTEALV 
AQIQQIDVTV THTETEALLL EHNYIKLYQP RYNVLLRDDK SYPFIFLSGD THPRLAMHRG
AKHAKGEYFG PFPNGYAVRE TLALLQKIFP IRQCENSVYR NRSRPCLQYQ IGRCLGPCVE
GLVSEEEYAQ QVEYVRLFLS GKDDQVLTQL ISRMETASQN LEFEEAARIR DQIQAVRRVT
EKQFVSNTGD DLDVIGVAFD AGMACVHVLF IRQGKVLGSR SYFPKVPGGT ELSEVVETFV
GQFYLQGSQM RTLPGEILLD FNLSDKTLLA DSLSELAGRK INVQTKPRGD RARYLKLART
NAATALTSKL SQQSTVHQRL TALASVLKLP EVKRMECFDI SHTMGEQTVA SCVVFDANGP
LRAEYRRYNI TGIRPGDDYA AMNQVLRRRY GKAIDDSKIP DVILIDGGKG QLAQAKNVFA
ELDVSWDKNH PLLLGVAKGA DRKAGLETLF FEPEGEGFSL PPDSPALHVI QHIRDESHDH
AIGGHRKKRA KVKNTSSLET IEGVGPKRRQ MLLKYMGGLQ GLRNASVEEI AKVPGISQGL
AEKIFWSLKH