| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1266 |
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| Symbol | sdiA |
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| ID | 6145924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 1262685 |
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| End bp | 1263407 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641616144 |
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| Product | DNA-binding transcriptional activator SdiA |
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| Protein accession | YP_001743327 |
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| Protein GI | 170683439 |
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| COG category | [K] Transcription |
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| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00315864 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.00193945 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGCAGGATA CGGATTTTTT CAGCTGGCGT CGCACGATGC TGTTGCGTTT TCAGAGGATG
GAGGCCGCAG AAGAGGTCTA CCATGAAATA GAGCTTCAGG CTCAGCAGCT GGAGTACGAT
TACTATTCGT TATGTGTTCG CCACCCGGTA CCATTCACGC GACCTAAAGT GGCTTTCTAC
ACCAATTACC CTGAGTCGTG GGTTAGTTAT TATCAGGCAA AAAATTTTCT CGCAATTGAT
CCGGTGCTGA ACCCTGAAAA CTTTAGTCAG GGCCATTTAA TGTGGAATGA TGACTTATTC
AGCGAAGCAC AGCCGTTATG GGAAGCCGCG CGCGCACATG GTTTACGCCG CGGTGTCACT
CAGTATTTAA TGCTGCCAAA TCGGGCGTTG GGCTTTTTGT CCTTTTCCCG TTGCAGCGCT
CGCGAAATAC CCATTCTTAG TGATGAACTG CAATTAAAAA TGCAGTTACT GGTGCGCGAA
AGTCTGATGG CTCTGATGCG TTTAAATGAT GAAATAGTGA TGACGCCAGA GATGAATTTC
AGCAAGCGCG AAAAAGAAAT TCTGAAATGG ACGGCGGAAG GGAAGACATC AGCAGAGATA
GCGATGATTT TGTCAATCTC TGAGAATACG GTCAATTTCC ATCAGAAAAA CATGCAGAAA
AAAATCAATG CACCAAATAA GACCCAGGTG GCCTGTTACG CGGCCGCTAC TGGCTTAATT
TGA
|
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| Protein sequence | MQDTDFFSWR RTMLLRFQRM EAAEEVYHEI ELQAQQLEYD YYSLCVRHPV PFTRPKVAFY
TNYPESWVSY YQAKNFLAID PVLNPENFSQ GHLMWNDDLF SEAQPLWEAA RAHGLRRGVT
QYLMLPNRAL GFLSFSRCSA REIPILSDEL QLKMQLLVRE SLMALMRLND EIVMTPEMNF
SKREKEILKW TAEGKTSAEI AMILSISENT VNFHQKNMQK KINAPNKTQV ACYAAATGLI
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