| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1221 |
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| Symbol | |
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| ID | 6143519 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1224155 |
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| End bp | 1225318 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641616099 |
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| Product | porin family protein |
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| Protein accession | YP_001743282 |
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| Protein GI | 170682358 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.263748 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGAA AAGTTCTGGC AATGCTGGTC CCGGCGTTAT TAGTTGCTGG CGCAGCAAAT
GCGGCTGAAA TTTATAATAA AAATGGCAAT AAACTGGATC TGTACGGAAA AGTTGATGCT
CGTCATACTT TTTCCGATAA CCCTGGCGAT GACGGCGATG AAACTATCAT CGAGTTAGGC
TTCAAAGGTG AGACCCAAAT TACAGATCAG TTAACTGGTT ATGGTCAAGC ACTGACCAAA
ACAAAGGCTA GCGACACTGA AGGTTCTGAT AATACTTATG TCAAACTTGC TTTTGCAGGT
CTGAAGTTCG GCGAGATGGG CTCCTTTGAC TATGGTCGTA ACTATGGTGT GATTTACGAC
GTTGAAGCCT GGACAGATAT GCTTCCTGTA TTCGGCGGCG ACTCCTATAC CTGGACTGAT
AACTTCATGG CAGGCCGTGC AAATGGGGTA GCTACTTACC GCAATAGTGA TTTCTTCGGT
CTGGTGGAAG GTCTGAACTT TGCATTGCAG TATCAAGGTA ACAACGAAGG CAGCAATGCA
GGAGAAGATC AAGAAGGTAC TAAAAATGGT CACGAAGACG TTCGCTTCCA GAACGGTGAT
GGTTTTGGTC TTTCCACTTC ATATGACTTT GACTTCGGTT TGAGCTTAGG TGCCGCTTAC
TCAAACTCTG ACCGTACCAA TTCTCAAGTA GCTCTTGGCG GGTATCACTA CAATGAATAC
AGCAAATTTG CTGGTGGTGA TACAGCTGAA GCATGGACAT TTGGTGCAAA ATACGACGCC
AACAATGTTT ATCTTGCAAT GATGTATGCT GAAACCCGCA ATATGACACC ATATGGTAAT
GTGGGTATCG CAAATAAAAC CCAGAACTTT GAAGCTGTAG CACAGTATCA GTTCGATTTT
GGTCTGCGCC CATCTCTTGC ATATGTTTAT TCAAAAGGCA AAGACCTCGG CGGTAACGAC
TATAACAACA ATGGTCATCA AGAGTATGTT GATCAGGATC TGGTCAACTA TGTTGAAATT
GGAGCGACCT ACTATTTCAA TAAGAACTTC TCAACATATG TTGACTATAA AATAAACTTG
TTGGATAAAG ATGACGATTT CTATGACAAC AATGGCATCG CAACAGATGA CGTTGTTGGT
GTGGGCTTAG TCTACCAGTT CTAA
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| Protein sequence | MKRKVLAMLV PALLVAGAAN AAEIYNKNGN KLDLYGKVDA RHTFSDNPGD DGDETIIELG
FKGETQITDQ LTGYGQALTK TKASDTEGSD NTYVKLAFAG LKFGEMGSFD YGRNYGVIYD
VEAWTDMLPV FGGDSYTWTD NFMAGRANGV ATYRNSDFFG LVEGLNFALQ YQGNNEGSNA
GEDQEGTKNG HEDVRFQNGD GFGLSTSYDF DFGLSLGAAY SNSDRTNSQV ALGGYHYNEY
SKFAGGDTAE AWTFGAKYDA NNVYLAMMYA ETRNMTPYGN VGIANKTQNF EAVAQYQFDF
GLRPSLAYVY SKGKDLGGND YNNNGHQEYV DQDLVNYVEI GATYYFNKNF STYVDYKINL
LDKDDDFYDN NGIATDDVVG VGLVYQF
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