| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0993 |
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| Symbol | |
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| ID | 6146501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1008367 |
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| End bp | 1011684 |
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| Gene Length | 3318 bp |
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| Protein Length | 1105 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641615880 |
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| Product | putative sensor protein |
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| Protein accession | YP_001743072 |
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| Protein GI | 170682376 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3447] Predicted integral membrane sensor domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 0.7374 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAAC AATCACAGCA TGTATTAATT GCCCTGCCCC ACCCGCTGCT TCACCTGGTC
AGTTTAGGTT TAGTCTCGTT TATCTTTACC CTTTTCTCGC TTGAGCTTTC GCAGTTTGGC
ACCCAACTCG CCCCACTGTG GTTCCCGACG TCCATCATGA TGGTGGCGTT TTATCGCCAT
GCCGGGCGCA TGTGGCCGGG GATTGCGCTG AGCTGCTCGC TGGGAAATAT CGCCGCATCC
ATCCTGCTTT TTTCCACCAG CTCGCTGAAC ATGACCTGGA CGACCATCAA TATTGTTGAA
GCCGTGGTCG GGGCAGTGCT ACTGCGTAAA TTGCTGCCGT GGTATAACCC ATTGCAAAAT
CTGGCTGACT GGCTGCGTCT GGCACTCGGC AGCGCCATTG TTCCACCTCT GTTAGGGGGT
GTTCTGGTTA TCCTGCTGAC GCCCGGAGAC GATCCTCTCA GGGCATTTTT GATATGGGTA
CTGTCAGAAT CCATCGGCGC ACTGGCACTG GTGCCGCTGG GATTGTTATT TAAACCACAC
TATCTGCTGC GCCATCGCAA CCCACGGTTG CTTTTTGAGT CGCTGCTCAC GTTAGCCATC
ACACTGACGT TAAGCTGGCT TTCGATGCTG TATCTGCCGT GGCCTTTTAC TTTCATTATT
GTGCTGTTGA TGTGGAGCGC CGTGCGCCTG CCACGAATGG AAGCCTTTTT GATCTTCCTT
ACCACGGTGA TGATGGTGTC ACTGATGATG GCCGCTGATC CCTCCCTGCT TGCTACGCCG
CGTACATACC TGATGAGCCA TATGCCGTGG CTACCGTTTT TGCTGATCCT GCTGCCCGCC
AACATCATGA CCATGGTGAT GTATGCCTTT CGTGCGGAAC GCAAACACAT TTCCGAAAGC
GAAACCCGTT TTCGTAACGC CATGGAATAT TCCGCCATCG GCATGGCATT AGTGGGCACC
GAGGGGCAAT GGCTGCAATC CAACAAAGCA CTCTGCCAGT TTCTCGGTTA CAGTCAGGAA
GAGCTGCGCG GACTCACCTT TCAGCAACTG ACCTGGCCGG AGGATCTCAA TAAAGATCTC
CAACAGGTTG AAAAGCTGAT CAGCGGTGAA ATAAACACCT ATTCAATGGA AAAACGCTAC
TACAACCGCA ATGGCGATGT TGTCTGGGCG TTGCTTGCCG TCTCACTGGT GCGCCACACG
GATGGCACGC CGCTCTATTT TATCGCTCAG ATTGAAGACA TTAACGAGCT AAAACGCACC
GAACAGGTGA ATCAGCAACT GATGGAGCGC ATCACGCTGG CCAACGAAGC GGGCGGGATT
GGCATCTGGG AGTGGGAGCT GAAGCCGAAT ATTTTTAGCT GGGATAAGCG GATGTTCGAG
CTGTATGAAA TTCCTCCGCA TATCAAACCG AACTGGCAGG TGTGGTACGA GTGCGTGCTG
CCGGAAGATC GCCAGCACGC CGAAAAAGTG ATTCGTGATT CGTTGCAATC ACGCTCGCCC
TTTAAACTGG AATTTCGCAT TACCGTGAAA GACGGCATTC GCCATATCCG CGCCCTCGCT
AACCGGGTAC TGAATAAAGA AGGCGAAGTC GAACGCCTGC TCGGCATTAA TATGGATATG
ACCGAAGTGA AACAGCTTAA CGAGGCATTG TTTCAGGAAA AAGAGCGCCT GCACATAACG
CTGGATTCCA TCGGCGAAGC CGTGGTCTGT ATTGATATGG CAATGAAAAT TACCTTTATG
AATCCGGTGG CGGAGAAGAT GAGCGGCTGG ACGCAGGAAG AAGCGTTAGG TGTTCCGCTC
CTGACGGTGT TGCATATTAC TTTTGGCGAC AACGGACCAT TAATGGAGAA CATTTACAGT
GCCGACACCT CACGTTCCGC GATTGAACAA GATGTGGTGT TGCACTGCCG AAGCGGCGGC
AGCTACGACG TGCATTACAG TATTACGCCG TTAAGTACTC TGGACGGCAG CAATATTGGT
TCGGTTCTGG TGATTCAGGA CGTCACCGAA TCGCGCAAAA TGCTGCGCCA GCTGAGCTAC
AGCGCCTCCC ATGATGCACT GACGCATCTC GCCAATCGCG CCAGTTTTGA GAAGCAACTA
CGCATCCTGC TGCAAACGGT AAACAGTACG CATCAGCGAC ATGCCCTGGT GTTTATCGAT
CTTGATCGCT TTAAAGCGGT GAATGACAGC GCCGGGCACG CCGCTGGCGA CGCTTTACTG
CGCGAACTGG CGTCATTGAT GCTGAGTATG CTGCGCTCCA GCGACGTGCT GGCGCGACTC
GGTGGCGATG AATTTGGTCT GCTGCTGCCA GATTGTAATG TCGAAAGTGC GCGTTTTATC
GCTACACGCA TTATCAGCGC CGTGAATGAC TATCACTTTA TCTGGGAAGG ACGAGTACAT
CGGGTAGGTG CCAGTGCCGG GATTACCTTG ATTGATGACA ACAATCATCA GGCGGCTGAA
GTGATGTCGC AGGCTGATAT CGCCTGTTAT GCCTCCAAAA ATGGTGGACG GGGCCGGGTG
ACGGTTTACG AACCGCAGCA AGCTGCCACA AATAGCGAAC GGGCGGTGAT GTCGCTTGAT
GAACAGTGGC GGATGATTAA AGAGAATCAG TTGATGATGA TCGCCCACGG TGTCGCTTCG
CCGCGGATCC CGCAAGCGCG TAATTTGTGG CTGATTTCAC TTAAGCTCTG GAGTTGCGAA
GGCGAGATTA TTGATGAACA AACATTTCGT CGTAGCTTCA GCGATCCGGC ACTTAGCCAT
GCTCTTGACC GACGGGTATT CCACGATTTT TTCCAGCAGA CCGCAAAAGC GATTGCCAGT
AAAGGCTTAA GCATCGCCCT CCCCCTTTCC GTTGCCGGTT TGAGTAGCGC CACGCTGGTG
AATGAACTAA TTGAGCAGCT GGAAAATAGC CCTCTACCAC CACGGTTATT ACATCTGATT
ATTCCGGCAG ACGCGATTTT AGATCACGCA GAAAGCGTGC AAAAACTGCG GCTGGCGGGA
TGTCGGATCG TATTCAGTCA GGTGGGCCGC GATCTGCAAA TCTTCAACTC GTTGAAAGCA
AATATGGCAG ATTACCTGCT ACTTGATGGT GAGTTATGCG CCAACGTGCA GGGAAATTTG
ATGGATGAGA TGCTGATTAC GATCATTCAG GGGCACGCTC AGCGACTCGG GATGAAAACC
ATCGCCGGGC CAGTCGTTTT ACCCTTAGTG ATGGATACGC TTTCTGGCAT CGGCGTCGAT
CTGATTTATG GCGATGTGAT TGCCGATGCC CAACCGCTGG ATTTGCTGGT GAATAGCAGT
TATTTCGCGA TTAACTGA
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| Protein sequence | MSKQSQHVLI ALPHPLLHLV SLGLVSFIFT LFSLELSQFG TQLAPLWFPT SIMMVAFYRH
AGRMWPGIAL SCSLGNIAAS ILLFSTSSLN MTWTTINIVE AVVGAVLLRK LLPWYNPLQN
LADWLRLALG SAIVPPLLGG VLVILLTPGD DPLRAFLIWV LSESIGALAL VPLGLLFKPH
YLLRHRNPRL LFESLLTLAI TLTLSWLSML YLPWPFTFII VLLMWSAVRL PRMEAFLIFL
TTVMMVSLMM AADPSLLATP RTYLMSHMPW LPFLLILLPA NIMTMVMYAF RAERKHISES
ETRFRNAMEY SAIGMALVGT EGQWLQSNKA LCQFLGYSQE ELRGLTFQQL TWPEDLNKDL
QQVEKLISGE INTYSMEKRY YNRNGDVVWA LLAVSLVRHT DGTPLYFIAQ IEDINELKRT
EQVNQQLMER ITLANEAGGI GIWEWELKPN IFSWDKRMFE LYEIPPHIKP NWQVWYECVL
PEDRQHAEKV IRDSLQSRSP FKLEFRITVK DGIRHIRALA NRVLNKEGEV ERLLGINMDM
TEVKQLNEAL FQEKERLHIT LDSIGEAVVC IDMAMKITFM NPVAEKMSGW TQEEALGVPL
LTVLHITFGD NGPLMENIYS ADTSRSAIEQ DVVLHCRSGG SYDVHYSITP LSTLDGSNIG
SVLVIQDVTE SRKMLRQLSY SASHDALTHL ANRASFEKQL RILLQTVNST HQRHALVFID
LDRFKAVNDS AGHAAGDALL RELASLMLSM LRSSDVLARL GGDEFGLLLP DCNVESARFI
ATRIISAVND YHFIWEGRVH RVGASAGITL IDDNNHQAAE VMSQADIACY ASKNGGRGRV
TVYEPQQAAT NSERAVMSLD EQWRMIKENQ LMMIAHGVAS PRIPQARNLW LISLKLWSCE
GEIIDEQTFR RSFSDPALSH ALDRRVFHDF FQQTAKAIAS KGLSIALPLS VAGLSSATLV
NELIEQLENS PLPPRLLHLI IPADAILDHA ESVQKLRLAG CRIVFSQVGR DLQIFNSLKA
NMADYLLLDG ELCANVQGNL MDEMLITIIQ GHAQRLGMKT IAGPVVLPLV MDTLSGIGVD
LIYGDVIADA QPLDLLVNSS YFAIN
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