Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_0983 |
Symbol | mdtD |
ID | 6144223 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 992067 |
End bp | 993482 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641615870 |
Product | multidrug efflux system protein MdtE |
Protein accession | YP_001743062 |
Protein GI | 170682817 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.500741 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 0.355503 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGATC TTCCCGACAG CACCCGCTGG CAATTGTGGA TTGTGGCTTT CGGCTTCTTT ATGCAGTCGC TGGACACCAC CATCGTTAAC ACCGCGCTTC CCTCAATGGC GCAAAGCCTC GGGGAAAGTC CGTTGCATAT GCACATGGTC ATCGTATCTT ATGTGCTGAC CGTGGCTGTG ATGCTGCCCG CCAGCGGCTG GCTGGCGGAC AAAGTCGGCG TGCGCAATAT TTTCTTTACC GCCATCGTGC TGTTTACTCT CGGTTCACTA TTTTGCGCAC TTTCCGGCAC GCTGAACGAA CTGTTGCTGG CACGCGCGTT ACAGGGCGTT GGCGGTGCGA TGATGGTGCC GGTCGGCAGG TTGACGGTGA TGAAAATCGT ACCGCGCGAG CAGTATATGG CGGCGATGAC CTTTGTCACA CTGCCCGGTC AGGTCGGTCC GCTGCTTGGC CCGGCGCTCG GCGGTCTGCT GGTGGAGTAC GCATCGTGGC ACTGGATCTT TTTGATCAAC ATTCCGGTGG GGATTATTGG GGCGATCGCC ACACTGATGT TAATGCCGAA CTACACCATG CAGACGCGGC GCTTCGATCT CTCCGGCTTT TTATTGCTGG CGGTTGGCAT GGCGGTATTA ACCCTGGCGC TGGACGGCAG TAAAGGTACA GGTTTATCGC CGCTGGCGAT TGCTGGCCTG GTCGCAGTTG GCGTGGTAGC ACTGGTGCTT TATCTGCTGC ACGCCAGAAA TAACAACCGC GCTCTTTTCA GTCTGAAACT GTTCCGTACT CGTACCTTTT CGCTGGGTCT GGCGGGGAGT TTTGCCGGAC GTATCGGTAG CGGCATGTTG CCCTTTATGA CGCCGGTTTT CCTGCAAATT GGCCTTGGCT TCTCACCGTT TCATGCCGGA CTGATGATGA TCCCGATGGT GCTCGGCAGC ATGGGGATGA AGCGAATTGT GGTACAGGTA GTGAATCGCT TTGGTTATCG TCGGGTACTG GTGGCGACCA CGCTGGGTCT GTCGCTGGTC ACCCTGTTGT TTATGACCAC TGCTCTGCTG GGCTGGTACT ACGTTTTGCC GTTCGTCCTG TTTTTACAAG GGATGGTCAA CTCGACGCGT TTCTCCTCCA TGAACACCCT GACGCTGAAA GATCTCCCGG ACAATCTGGC GAGCAGCGGA AACAGCCTGC TGTCGATGAT TATGCAATTG TCGATGAGTA TCGGCGTCAC TATCGCCGGG CTGTTGCTGG GACTTTTTGG TTCACAGCAT GTCAGCGTCG ACAGCGGCAC CACACAAACC GTCTTTATGT ACACCTGGCT TAGCATGGCG TTTATCATCG CCCTTCCGGC GTTCATCTTT GCCAGAGTGC CGAACGATAC GCATCAAAAT GTAGCTATTT CGCGGCGAAA AAGGAGCGCG CAATGA
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Protein sequence | MTDLPDSTRW QLWIVAFGFF MQSLDTTIVN TALPSMAQSL GESPLHMHMV IVSYVLTVAV MLPASGWLAD KVGVRNIFFT AIVLFTLGSL FCALSGTLNE LLLARALQGV GGAMMVPVGR LTVMKIVPRE QYMAAMTFVT LPGQVGPLLG PALGGLLVEY ASWHWIFLIN IPVGIIGAIA TLMLMPNYTM QTRRFDLSGF LLLAVGMAVL TLALDGSKGT GLSPLAIAGL VAVGVVALVL YLLHARNNNR ALFSLKLFRT RTFSLGLAGS FAGRIGSGML PFMTPVFLQI GLGFSPFHAG LMMIPMVLGS MGMKRIVVQV VNRFGYRRVL VATTLGLSLV TLLFMTTALL GWYYVLPFVL FLQGMVNSTR FSSMNTLTLK DLPDNLASSG NSLLSMIMQL SMSIGVTIAG LLLGLFGSQH VSVDSGTTQT VFMYTWLSMA FIIALPAFIF ARVPNDTHQN VAISRRKRSA Q
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