Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_0717 |
Symbol | kdpD |
ID | 6147135 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 720966 |
End bp | 723650 |
Gene Length | 2685 bp |
Protein Length | 894 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 641615607 |
Product | sensor protein KdpD |
Protein accession | YP_001742806 |
Protein GI | 170682267 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.649763 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 0.772603 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAACG AACCCTTACG TCCCGACCCC GATCGTCTGC TGGAACAAAC TGCCGCGCCG CATCGGGGGA AGCTGAAAGT TTTCTTCGGT GCCTGCGCAG GCGTCGGGAA GACCTGGGCG ATGCTGGCAG AAGCCCAGCG ACTGCGGGCG CAAGGGCTGG ATATTGTGGT TGGCGTGGTA GAAACCCACG GGCGGAAAGA TACCGCCGCA ATGCTGGAAG GGCTGGCTGT TCTGCCGTTA AAACGCCAGG CGTACCGTGG GCGGCACATC AGCGAGTTTG ATCTCGATGC CGCCCTCGCC CGCCGTCCGG CACTGATCTT AATGGACGAA CTGGCGCACA GTAATGCGCC AGGTTCTCGT CATCCCAAAC GCTGGCAGGA TATTGAAGAA CTGCTGGAAG CTGGCATTGA TGTTTTCACT ACCGTCAACG TTCAGCATCT GGAAAGTCTG AATGATGTGG TCAGCGGCGT CACCGGAATT CAGGTACGGG AAACCGTGCC CGATCCTTTT TTTGATGCCG CCGACGACGT AGTACTGGTG GACTTGCCCC CGGACGATCT GCGCCAGCGA CTGAAAGAAG GCAAAGTCTA TATTGCCGGG CAGGCGGAGC GCGCCATTGA ACATTTTTTT CGTAAAGGTA ATCTGATCGC CCTGCGCGAA CTGGCACTGC GCCGTACTGC CGATCGCGTT GATGAGCAAA TGCGCGCCTG GCGGGGGCAT CCTGGCGAAG AGAAAGTCTG GCACACGCGC GACGCGATCC TTTTATGCAT CGGGCATAAC ACCGGCAGCG AAAAACTGGT CCGCGCGGCG GCGCGGCTGG CGTCACGGCT GGGAAGCGTC TGGCACGCGG TGTATGTTGA AACCCCTGCC CTGCACCGCT TACCGGAGAA AAAACGTCGG GCAATTCTCA GCGCCTTACG TCTGGCGCAG GAGCTGGGCG CAGAGACGGC AACACTTTCT GATCCAGCGG AAGAGAAAGC GGTAGTGCGT TATGCCCGTG AACATAATCT CGGCAAGATT ATTCTCGGTC GCCCAGCCTC GCGCCGCTGG TGGCGTCGGG AAACGTTTGC TGACCGACTG GCGCGAATCG CCCCCGATCT CGATCAGGTG CTGGTCGCGC TTGATGAACC ACCCGCCCGC ACGATAAACA ACGCGCTGGA TAGCCGCTCT TTTAAAGACA AGTGGCGGGT ACAGATTCAG GGATGCGTGG TTGCCGCCGC GTTATGCGCC GTTATCACCT TAATTGCCAT GCAGTGGCTG ATGGCGTTTG ATGCCGCCAA CCTGGTGATG CTGTATCTGC TTGGCGTGGT GATGGTGGCG CTATTTTATG GACGCTGGCC TTCAGTGGTT GCCACCGTCA TTAATGTGGT GAGTTTCGAT CTCTTTTTTA TCGCCCCACG CGGCACGCTC GCCGTCTCTG ATGTGCAATA TCTACTGACC TTCGCGGTGA TGTTAACCGT CGGGCTGGTG ATCGGGAACC TTACTGCGGG CGTGCGTTAT CAGGCGCGGG TAGCCCGTTA CCGCGAGCAA CGCACACGGC ACTTATATGA AATGTCGAAA GCTCTGGCTG TGGGCCGCAG TCCGCAGGAC ATCGCCGCCA CCAGCGAACA ATTTATTGCC TCCACGTTTC ATGCCCGCAG TCAGGTGCTG TTACCCGATG ACAACGGTAA ATTGCAGCCG TTAACACATC CGCAAGGAAT GACGCCGTGG GACGATGCCA TCGCGCAGTG GAGTTTTGAT AAAGGCCTGC CTGCGGGCGC GGGCACCGAC ACGTTACCCG GTGTACCGTA CCAGATTTTG CCGCTAAAAA GCGGCGAGAA AACCTACGGA CTGGTGGTGG TGGAACCGGG GAATCTGCGT CAATTGATGA TCCCGGAACA GCAGCGCCTG CTGGAGACGT TTACGCTGTT AGTCGCCAAT GCCCTTGAGC GGCTGACGCT GACCGCCAGC GAAGAACAGG CGCGGATGGC AAGCGAACGA GAACAGATCC GCAACGCCCT GCTGGCGGCA CTTTCGCATG ATTTACGCAC GCCGCTTACG GTGCTGTTCG GTCAGGCAGA AATCTTAACG CTCGATCTGG CAAGCGAAGG ATCGCCCCAC GCCCGCCAGG CCAGCGAGAT TCGCCAGCAT GTGCTGAACA CGACCCGACT GGTGAATAAT CTACTGGATA TGGCGCGAAT TCAGTCCGGC GGCTTTAATT TGAAGAAAGA GTGGTTAACG CTGGAAGAAG TGGTCGGCAG CGCGCTGCAA ATGCTGGAAC CGGGTTTATC GTCGCCCATC AATCTTTCTC TGCCAGAACC GCTGACCTTA ATCCACGTTG ACGGGCCACT GTTTGAACGG GTGCTGATTA ATCTGCTGGA GAACGCGGTG AAATACGCGG GTGCGCAGGC CGAAATTGGT ATCGATGCCC ACGTTGAGGG CGAAAATCTA CAACTGGATG TCTGGGATAA TGGCCCCGGT CTTCCACCAG GCCAGGAGCA GACGATTTTC GATAAGTTTG CTCGTGGAAA TAAAGAGTCG GCGGTGCCGG GGGTAGGGCT TGGGCTGGCA ATTTGTCGGG CGATTGTGGA TGTACACGGC GGCACCATTA CCGCGTTCAA CCGACCGGAA GGTGGTGCCT GTTTTCGTGT TACACTTCCC CAGCAAACTG CCCCTGAACT TGAAGAATTT CATGAGGATA TGTGA
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Protein sequence | MNNEPLRPDP DRLLEQTAAP HRGKLKVFFG ACAGVGKTWA MLAEAQRLRA QGLDIVVGVV ETHGRKDTAA MLEGLAVLPL KRQAYRGRHI SEFDLDAALA RRPALILMDE LAHSNAPGSR HPKRWQDIEE LLEAGIDVFT TVNVQHLESL NDVVSGVTGI QVRETVPDPF FDAADDVVLV DLPPDDLRQR LKEGKVYIAG QAERAIEHFF RKGNLIALRE LALRRTADRV DEQMRAWRGH PGEEKVWHTR DAILLCIGHN TGSEKLVRAA ARLASRLGSV WHAVYVETPA LHRLPEKKRR AILSALRLAQ ELGAETATLS DPAEEKAVVR YAREHNLGKI ILGRPASRRW WRRETFADRL ARIAPDLDQV LVALDEPPAR TINNALDSRS FKDKWRVQIQ GCVVAAALCA VITLIAMQWL MAFDAANLVM LYLLGVVMVA LFYGRWPSVV ATVINVVSFD LFFIAPRGTL AVSDVQYLLT FAVMLTVGLV IGNLTAGVRY QARVARYREQ RTRHLYEMSK ALAVGRSPQD IAATSEQFIA STFHARSQVL LPDDNGKLQP LTHPQGMTPW DDAIAQWSFD KGLPAGAGTD TLPGVPYQIL PLKSGEKTYG LVVVEPGNLR QLMIPEQQRL LETFTLLVAN ALERLTLTAS EEQARMASER EQIRNALLAA LSHDLRTPLT VLFGQAEILT LDLASEGSPH ARQASEIRQH VLNTTRLVNN LLDMARIQSG GFNLKKEWLT LEEVVGSALQ MLEPGLSSPI NLSLPEPLTL IHVDGPLFER VLINLLENAV KYAGAQAEIG IDAHVEGENL QLDVWDNGPG LPPGQEQTIF DKFARGNKES AVPGVGLGLA ICRAIVDVHG GTITAFNRPE GGACFRVTLP QQTAPELEEF HEDM
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