Gene EcSMS35_0716 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_0716 
SymbolkdpE 
ID6144837 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp720292 
End bp720969 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content57% 
IMG OID641615606 
ProductDNA-binding transcriptional activator KdpE 
Protein accessionYP_001742805 
Protein GI170682921 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0593355 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value0.505732 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACAAACG TTCTGATTGT TGAAGATGAA CAGGCTATTC GTCGCTTTCT GCGCACGGCG 
CTGGAGGGCG ACGGGATGCG CGTCTTTGAG GCCGAAACGC TGCAACGCGG CTTGCTGGAA
GCGGCAACCC GTAAGCCAGA TTTGATTATT CTCGATCTCG GCCTGCCCGA TGGTGATGGG
ATTGAGTTTA TCCGCGACCT GCGCCAGTGG AGCGCGGTGC CGGTGATTGT GCTTTCCGCA
CGCAGCGAAG AGAGCGACAA AATCGCCGCA CTGGATGCCG GAGCGGATGA TTACCTGAGT
AAGCCGTTTG GCATTGGCGA ATTGCAGGCC CGTCTGCGCG TCGCTTTACG CCGCCACTCC
GCCACCACCG CGCCCGATCC GCTGGTGAAA TTTTCCGATG TGACCGTCGA TTTAGCCGCC
CGCGTGATTC ACCGGGGTGA GGAAGAGGTG CATCTCACGC CGATTGAATT CCGCCTGCTG
GCCGTGCTGC TCAACAACGC CGGAAAAGTG CTCACCCAGC GCCAGTTACT CAATCAGGTG
TGGGGACCAA ACGCGGTCGA ACACAGTCAT TATTTGCGTA TTTATATGGG GCATCTGCGA
CAAAAACTGG AGCAAGATCC CGCCCGCCCC CGCCATTTCA TTACTGAAAC CGGTATTGGG
TATCGGTTTA TGCTTTGA
 
Protein sequence
MTNVLIVEDE QAIRRFLRTA LEGDGMRVFE AETLQRGLLE AATRKPDLII LDLGLPDGDG 
IEFIRDLRQW SAVPVIVLSA RSEESDKIAA LDAGADDYLS KPFGIGELQA RLRVALRRHS
ATTAPDPLVK FSDVTVDLAA RVIHRGEEEV HLTPIEFRLL AVLLNNAGKV LTQRQLLNQV
WGPNAVEHSH YLRIYMGHLR QKLEQDPARP RHFITETGIG YRFML