| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0715 |
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| Symbol | speF |
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| ID | 6142751 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 717498 |
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| End bp | 719696 |
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| Gene Length | 2199 bp |
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| Protein Length | 732 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641615605 |
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| Product | ornithine decarboxylase |
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| Protein accession | YP_001742804 |
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| Protein GI | 170680662 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.139092 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 0.847041 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAAAT TAAAAATTGC GGTTAGTGAT TCTTGCCCGG ACTGTTTTAC CACGCAGCGA
GAATGTATCT ATATTAATGA AAACAGTAAT ATCGATGTGG CGGCAATAGT TTTATCGCTC
AACGATGTTA CACGCGGAAA ACTCGATGAA ATCGATGCCA CGGGTTATGG CATCCCGGTA
TTTATTGCTA CTGAAAATCA AGAACGTGTA CCCGCAGAGT ATTTGCCCCG TATTTCGGGT
GTCTTTGAGA ATTGCGAATC GCGACGAGAA TTTTATGGTC GTCAGTTAGA AACCGCAGCC
AGCCATTATG AAACTCAACT GCGCCCGCCC TTCTTCCGCG CACTGGTCGA TTATGTCAAT
CAGGGTAACA GCGCGTTTAA TTGCCCCGGT CATCAGGGCG GCGAATTTTT CCGTCGCCAT
CCGGCGGGGA ATCAGTTTGT GGAATACTTT GGTGAGGCGC TGTTCCGTGC TGACTTGTGC
AACGCGGATG TGGCAATGGG CGATCTGCTG ATTCACGAAG GCGCGCCATG CATTGCACAG
CAACATGCGG CAAAAGTGTT TAATGCCGAT AAAACATACT TCGTTCTAAA TGGCACTTCA
TCTTCTAACA AAGTGGTTTT AAACGCCCTG TTAACACCGG GGGATCTGGT GCTGTTTGAC
CGTAATAACC ATAAATCTAA TCACCACGGA GCGTTGCTAC AGGCTGGCGC AACACCAGTT
TATCTGGAAA CCGCACGCAA CCCGTATGGC TTTATCGGTG GTATTGATGC CCACTGCTTC
GAAGAAAATT ACCTGCGCGA ACTGATTACA GAAGTCGCAC CGCAGCGGGC AAAAGAGGCG
CGTCCTTTCC GCCTCGCCGT TATTCAGCTA GGCACTTACG ACGGTACGAT TTATAACGCC
CGTCAGGTGG TGGATAAAAT TGGTCATCTG TGTGACTACA TCCTCTTTGA CTCCGCATGG
GTCGGCTATG AGCAGTTTAT CCCGATGATG GCGGACTGTT CACCACTGTT GCTGGATCTT
AATGAGAACG ATCCGGGTAT TCTGGTTACG CAATCTGTGC ATAAACAGCA GGCTGGTTTT
TCCCAGACTT CACAAATCCA TAAAAAAGAC AGCCATATCA AAGGGCAACA GCGTTATGTA
CCGCACAAAC GCATGAACAA CGCCTTTATG ATGCATGCCT CCACCAGCCC GTTCTATCCG
CTGTTTGCCG CACTGGATAT CAACGCCAAA ATGCATGAAG GCGTCAGCGG TCGTAATATG
TGGATGGATT GTGTGGTAAA TGGCATTAAT GCCCGCAAAC TGATCCTCGA TAACTGTCAG
CATATTCGTC CATTCGTACC TGAACTGGTG GATGGTAAAC CCTGGCAGTC GTATGAAACA
GCGCAAATTG CGGTTGATCT GCGCTTCTTC CAGTTTGTAC CAGGTGAGCA CTGGCATTCT
TTTGAAGGCT ATGCAGAGAA TCAATACTTT GTCGATCCGT GCAAACTGTT GCTGACAACC
CCAGGTATTG ATGCACGTAA CGGCGAATAT GAAGCGTTCG GTGTACCCGC GACGATTCTT
GCTAACTTCC TGCGCGAAAA TGGCGTAGTG CCGGAAAAAT GCGATCTTAA CTCCATCCTC
TTTCTGCTGA CTCCGGCAGA AGATATGGCC AAACTTCAGC AACTTGCTGC TCTGCTGGTA
CGCTTCGAAA AACTGCTTGA GTCCGACGCG CCATTATCAG AAGTACTGCC TTCCATCTAC
AAACAGCATG AAGAGCGCTA CACCGGTTAT ACCCTGCGTC AGTTGTGTCA GGAAATGCAT
GATTTGTATG CCCGTCACAA CGTGAAACAA CTGCAAAAAG AGATGTTTCG TAAGGAACAC
TTCCCACGTG TCAGCATGAA TCCACAAGAA GCCAACTACG CCTATTTACG CGGTGAAGTG
GAGCTGGTTC GTCTGCCGGA TGCAGAAGGC CGTATCGCTG CAGAAGGTGC GCTTCCTTAT
CCTCCGGGAG TGCTGTGTGT TGTTCCGGGT GAAATCTGGG GTGGTGCTGT TCTGCGTTAC
TTCAGCGCTC TGGAAGAAGG GATCAACCTG CTGCCAGGTT TTGCACCGGA GCTTCAGGGT
GTCTATATCG AAGAACATGA TGGTCGTAAG CAAGTTTGGT GCTATGTCAT CAAGCCTCGT
GGTGCGCAAA GCACCCTGCT GAAAGGGGAA AAATTATGA
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| Protein sequence | MSKLKIAVSD SCPDCFTTQR ECIYINENSN IDVAAIVLSL NDVTRGKLDE IDATGYGIPV
FIATENQERV PAEYLPRISG VFENCESRRE FYGRQLETAA SHYETQLRPP FFRALVDYVN
QGNSAFNCPG HQGGEFFRRH PAGNQFVEYF GEALFRADLC NADVAMGDLL IHEGAPCIAQ
QHAAKVFNAD KTYFVLNGTS SSNKVVLNAL LTPGDLVLFD RNNHKSNHHG ALLQAGATPV
YLETARNPYG FIGGIDAHCF EENYLRELIT EVAPQRAKEA RPFRLAVIQL GTYDGTIYNA
RQVVDKIGHL CDYILFDSAW VGYEQFIPMM ADCSPLLLDL NENDPGILVT QSVHKQQAGF
SQTSQIHKKD SHIKGQQRYV PHKRMNNAFM MHASTSPFYP LFAALDINAK MHEGVSGRNM
WMDCVVNGIN ARKLILDNCQ HIRPFVPELV DGKPWQSYET AQIAVDLRFF QFVPGEHWHS
FEGYAENQYF VDPCKLLLTT PGIDARNGEY EAFGVPATIL ANFLRENGVV PEKCDLNSIL
FLLTPAEDMA KLQQLAALLV RFEKLLESDA PLSEVLPSIY KQHEERYTGY TLRQLCQEMH
DLYARHNVKQ LQKEMFRKEH FPRVSMNPQE ANYAYLRGEV ELVRLPDAEG RIAAEGALPY
PPGVLCVVPG EIWGGAVLRY FSALEEGINL LPGFAPELQG VYIEEHDGRK QVWCYVIKPR
GAQSTLLKGE KL
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