| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0488 |
|---|
| Symbol | |
|---|
| ID | 6144306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 493926 |
|---|
| End bp | 495626 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641615382 |
|---|
| Product | solute-binding family 5 protein |
|---|
| Protein accession | YP_001742589 |
|---|
| Protein GI | 170683749 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4533] ABC-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.189151 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACTGC TCAACCGTCT TAACCAGTAT CAACGTCTGT GGCAACCTTC CGCCGGAAAG
CCGCAAACCG TCACCGTCAG CGAACTGGCC GAACGCTGTT TTTGCAGCGA ACGCCATGTT
CGTACGCTGT TGCGTCAGGC ACAGGAGGCG GGATGGCTGG AGTGGCAGGC GCAGTCAGGA
CGCGGAAAGC GCGGACAATT ACGCTTTCTG GTCACGCCAG AATCGCTACG CAATGCGATG
ATGGAACAGG CGCTGGAAAC CGGAAAGCAG CAAGATGTGC TGGAGCTGGC GCAACTGGCC
CCAGGTGAGC TGCGCACTCT GTTACAGCCG TTTATGGGCG GACAATGGCA AAACGATACG
CCCACGTTGC GTATTCCCTA CTATCGCCCG CTCGAACCGC TACAACCGGG CTTTTTGCCC
GGCCGTGCCG AGCAGCATCT GGCCGGGCAG ATATTTTCCG GCCTGACCCG CTTCGATAAT
AATACCCAGC GCCCGATTGG CGATTTAGCG CATCACTGGG AAACCTCTAC TGACGGGTTA
CGCTGGGATT TTTATCTTCG CTCAACCTTA CACTGGCATA ACGGCGATGC AGTAAAAGCC
TCCCACTTAC ACCAGCGGTT ATTGATGCTG TTACAACTGC CAGCACTGGA TCAATTATTT
ATTAGCGTGA AGCGTATTGA AGTCACCCAT CCGCAGTGTC TGACCTTCTT TTTACATCGC
CCCGATTACT GGCTTGCGCA CCGGCTGGCG AGCTATTGCA GCCATCTGGC GCATCCGCAA
TTCCCCCTGA TCGGCACGGG TCCTTTTCGC TTAACACAAT TCACAGCGGA ACTGGTGCGC
CTGGAAAGCC ATGATTATTA CCATTTACGT CATCCGCTGC TTAAAGCGGT TGAGTACTGG
ATAACTCCGC CGCTTTTCGA AAAAGATTTG GGAACCAGTT GTCGGCATCC CGTGCAAATC
ACCATCGGCA AACCGGAGGA GCTGCAACGG GTCAGCCAGG TCAGTAGTGG CATCAGTTTA
GGTTTTTGCT ATTTAACGTT GCGCAAAAGT CCCCGACTGT CCCTCTGGCA GGCGCGAAAA
GTGATCTCCA TTATTCATCA ATCCGGTTTA TTACAAACGT TAGAAGTCGG AGAAAACCTG
ATCACCGCCA GTCATGCATT ACTGCCAGGC TGGACTATTC CGCAATGGCA AGTACCGGAT
GAGGTCAAAC TACCGAAAAC CTTGACGCTG GTTTATCACC TACCGATAGA ACTTCATACC
ATGGCAGAAC GTCTACAGGC GACACTGGCA GCGGAAGGCT GTGAACTCAC AATTATTTTT
CATAACGCAA AAAACTGGGA CGACACGACC CTACTGGCAC ACGCAGACCT CATGATGGGC
GACAGATTAA TTGGCGAAGC ACCGGAATAT ACCCTGGAGC AATGGCTGCG TTGCGATCCA
CTGTGGCCAC ATGTTTTCGA CGCTCCAGCA TATGCACATT TGCAATCGAC ACTGGACGCG
GTGCAAGTAA TGCCTGATGA GGAAAACCGA TTTAATGCCC TGAAAGCGGT TTTTAGCCAG
TTAATGGCAG ACGCGACGCT GACGCCGCTA TTCAACTATC ACTATCGCAT TAGTGCCCCT
CCCGGCGTGA ACGGTGTGCG ACTGACACCG CGCGGCTGGT TTGAATTTAC CGAAGCCTGG
CTTCCCGCGC CGTCGCAATG A
|
|---|
| Protein sequence | MRLLNRLNQY QRLWQPSAGK PQTVTVSELA ERCFCSERHV RTLLRQAQEA GWLEWQAQSG
RGKRGQLRFL VTPESLRNAM MEQALETGKQ QDVLELAQLA PGELRTLLQP FMGGQWQNDT
PTLRIPYYRP LEPLQPGFLP GRAEQHLAGQ IFSGLTRFDN NTQRPIGDLA HHWETSTDGL
RWDFYLRSTL HWHNGDAVKA SHLHQRLLML LQLPALDQLF ISVKRIEVTH PQCLTFFLHR
PDYWLAHRLA SYCSHLAHPQ FPLIGTGPFR LTQFTAELVR LESHDYYHLR HPLLKAVEYW
ITPPLFEKDL GTSCRHPVQI TIGKPEELQR VSQVSSGISL GFCYLTLRKS PRLSLWQARK
VISIIHQSGL LQTLEVGENL ITASHALLPG WTIPQWQVPD EVKLPKTLTL VYHLPIELHT
MAERLQATLA AEGCELTIIF HNAKNWDDTT LLAHADLMMG DRLIGEAPEY TLEQWLRCDP
LWPHVFDAPA YAHLQSTLDA VQVMPDEENR FNALKAVFSQ LMADATLTPL FNYHYRISAP
PGVNGVRLTP RGWFEFTEAW LPAPSQ
|
|---|
| |