| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0282 |
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| Symbol | lafS |
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| ID | 6147138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 291949 |
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| End bp | 292668 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641615180 |
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| Product | flagellar biosynthesis sigma factor |
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| Protein accession | YP_001742389 |
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| Protein GI | 170682912 |
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| COG category | [K] Transcription |
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| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
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| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00828678 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 0.769765 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTACAGG ACGTATTATT CGAGTCAGAA GAATTTGCTG CCGCGCCGGT ATTAACCCCG
CAGCAGGAGA GCCACTACTT GCAGGCCTAT TTACCACTGG TGCGTAAAGT GGTGCGGCAA
CTTGCCCCGC AGTGTAATTG CATTATTGAT CGTCAGGATA TGGAACAAAC GGCGTTAATG
GGGCTGCTTA ATGCCATTCG CCGCTACGGG CTGCCGGACG AAGGTTTTGC GGGCTATGCC
GTGCACCGTA TTCGCGGTGC GATCCTGGAT GAGCTGCGCG CTCTCGACTG GCGACCGCGC
CAGCTGCGAC AGAAATATCA TCAGATGAAA GACCTGATTC GCGAAACGCG TAAAAAACTG
GGGCACGAGC CTGAGTGGTC AGAACTGGCC GTGGAAGGGA TCTCGCATGA AGATTATCTC
GAATATCAGC AACTGGAAGG GGCGGAAACG CTCGCCAGCC TTGACGAACT GCTGAACGGC
GAAGGGCCAG GCATTCCGCT TGCTGGCCGG GAACTGGAAG ATCAGTTTGT CACCCAGCAA
ATGTTGCAAC ACGCGCTTTC ACAATTAAGC GAAAAAGAGC AACTGATCCT CTCCATGTAT
TACCAGCATG AGATGAATCT CAAAGAGATT GCGCTGGTAT TAGGGCTAAC CGAGGCCCGA
ATTTGTCAAC TGAATAAACA GATCGCGCAG AAAATTCGTG ATTTTGTCTA TCCGAATTAA
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| Protein sequence | MLQDVLFESE EFAAAPVLTP QQESHYLQAY LPLVRKVVRQ LAPQCNCIID RQDMEQTALM
GLLNAIRRYG LPDEGFAGYA VHRIRGAILD ELRALDWRPR QLRQKYHQMK DLIRETRKKL
GHEPEWSELA VEGISHEDYL EYQQLEGAET LASLDELLNG EGPGIPLAGR ELEDQFVTQQ
MLQHALSQLS EKEQLILSMY YQHEMNLKEI ALVLGLTEAR ICQLNKQIAQ KIRDFVYPN
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