Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_0176 |
Symbol | dapD |
ID | 6143235 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 194570 |
End bp | 195394 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641615077 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_001742293 |
Protein GI | 170682872 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 66 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCAGT TACAGAACAT TATTGAAACC GCTTTTGAAC GCCGTGCCGA GATCACGCCA GCCAATGCAG ACACCGTTAC CCGCGAAGCG GTAAATCAGG TGATCGCCCT GCTGGATTCC GGCGCACTGC GTGTAGCGGA AAAAATTGAC GGTCAGTGGG TGACGCATCA GTGGTTGAAA AAAGCGGTGC TGCTCTCTTT CCGTATTAAT GATAATCAGG TGATCGAAGG GGCAGAAAGC CGCTACTTCG ACAAAGTGCC GATGAAATTC GCTAACTACG ATGCAGCACG TTTCCAGAAA GAAGGCTTCC GCGTCGTGCC ACCAGCGGCA GTGCGTCAGG GCGCGTTCAT TGCCCGTAAC ACCGTGCTGA TGCCGTCTTA CGTCAACATC GGCGCATATG TTGATGAAGG CACCATGGTT GATACCTGGG CGACCGTCGG TTCCTGTGCG CAGATTGGTA AAAACGTCCA CCTTTCCGGT GGCGTGGGTA TCGGCGGCGT GCTGGAGCCG CTGCAGGCTA ACCCGACCAT TATTGAAGAT AACTGCTTCA TCGGCGCACG CTCTGAAGTG GTTGAAGGGG TGATTGTCGA AGAAGGTTCC GTCATTTCCA TGGGCGTATA CATTGGTCAG AGCACCCGTA TTTACGACCG TGAAACCGGC GAAATCCACT ACGGTCGCGT TCCGGCAGGG TCTGTGGTTG TTTCAGGTAA TCTGCCGTCG AAAGATGGCA AATACAGTCT CTACTGTGCA GTTATCGTTA AGAAAGTTGA CGCGAAAACT CGCGGTAAAG TTGGTATTAA CGAACTGCTG CGTACCATCG ACTAA
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Protein sequence | MQQLQNIIET AFERRAEITP ANADTVTREA VNQVIALLDS GALRVAEKID GQWVTHQWLK KAVLLSFRIN DNQVIEGAES RYFDKVPMKF ANYDAARFQK EGFRVVPPAA VRQGAFIARN TVLMPSYVNI GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQANPTIIED NCFIGARSEV VEGVIVEEGS VISMGVYIGQ STRIYDRETG EIHYGRVPAG SVVVSGNLPS KDGKYSLYCA VIVKKVDAKT RGKVGINELL RTID
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