Gene EcSMS35_0176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_0176 
SymboldapD 
ID6143235 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp194570 
End bp195394 
Gene Length825 bp 
Protein Length274 aa 
Translation table11 
GC content53% 
IMG OID641615077 
Product2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 
Protein accessionYP_001742293 
Protein GI170682872 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2171] Tetrahydrodipicolinate N-succinyltransferase 
TIGRFAM ID[TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones66 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCAGT TACAGAACAT TATTGAAACC GCTTTTGAAC GCCGTGCCGA GATCACGCCA 
GCCAATGCAG ACACCGTTAC CCGCGAAGCG GTAAATCAGG TGATCGCCCT GCTGGATTCC
GGCGCACTGC GTGTAGCGGA AAAAATTGAC GGTCAGTGGG TGACGCATCA GTGGTTGAAA
AAAGCGGTGC TGCTCTCTTT CCGTATTAAT GATAATCAGG TGATCGAAGG GGCAGAAAGC
CGCTACTTCG ACAAAGTGCC GATGAAATTC GCTAACTACG ATGCAGCACG TTTCCAGAAA
GAAGGCTTCC GCGTCGTGCC ACCAGCGGCA GTGCGTCAGG GCGCGTTCAT TGCCCGTAAC
ACCGTGCTGA TGCCGTCTTA CGTCAACATC GGCGCATATG TTGATGAAGG CACCATGGTT
GATACCTGGG CGACCGTCGG TTCCTGTGCG CAGATTGGTA AAAACGTCCA CCTTTCCGGT
GGCGTGGGTA TCGGCGGCGT GCTGGAGCCG CTGCAGGCTA ACCCGACCAT TATTGAAGAT
AACTGCTTCA TCGGCGCACG CTCTGAAGTG GTTGAAGGGG TGATTGTCGA AGAAGGTTCC
GTCATTTCCA TGGGCGTATA CATTGGTCAG AGCACCCGTA TTTACGACCG TGAAACCGGC
GAAATCCACT ACGGTCGCGT TCCGGCAGGG TCTGTGGTTG TTTCAGGTAA TCTGCCGTCG
AAAGATGGCA AATACAGTCT CTACTGTGCA GTTATCGTTA AGAAAGTTGA CGCGAAAACT
CGCGGTAAAG TTGGTATTAA CGAACTGCTG CGTACCATCG ACTAA
 
Protein sequence
MQQLQNIIET AFERRAEITP ANADTVTREA VNQVIALLDS GALRVAEKID GQWVTHQWLK 
KAVLLSFRIN DNQVIEGAES RYFDKVPMKF ANYDAARFQK EGFRVVPPAA VRQGAFIARN
TVLMPSYVNI GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQANPTIIED
NCFIGARSEV VEGVIVEEGS VISMGVYIGQ STRIYDRETG EIHYGRVPAG SVVVSGNLPS
KDGKYSLYCA VIVKKVDAKT RGKVGINELL RTID