| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0131 |
|---|
| Symbol | speE |
|---|
| ID | 6146827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 145806 |
|---|
| End bp | 146672 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641615032 |
|---|
| Product | spermidine synthase |
|---|
| Protein accession | YP_001742248 |
|---|
| Protein GI | 170683238 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | [TIGR00417] spermidine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.316229 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGAAA AAAAACAGTG GCATGAAACG CTACACGACC AGTTTGGGCA GTACTTTGCG
GTAGATAACG TTCTGTATCA TGAAAAGACC GATCACCAGG ATCTGATCAT TTTTGAGAAC
GCTGCATTTG GTCGCGTAAT GGCGCTGGAT GGCGTAGTAC AAACCACCGA GCGCGACGAG
TTTATCTATC ATGAGATGAT GACCCATGTT CCGCTACTGG CCCACGGTCA CGCGAAACAT
GTGCTGATTA TCGGCGGCGG CGACGGTGCC ATGCTGCGTG AAGTAACCCG ACATAAAAAC
GTTGAGTCAA TCACGATGGT GGAAATCGAT GCGGGTGTCG TATCGTTCTG CCGTCAGTAT
CTGCCCAACC ATAACGCCGG TAGCTACGAC GATCCGCGCT TTAAACTGGT GATCGACGAT
GGCGTCAATT TCGTGAATCA AACCAGCCAG ACCTTTGATG TCATTATCTC CGACTGCACC
GATCCTATCG GTCCCGGCGA AAGTCTGTTC ACCTCAGCAT TTTATGAAGG CTGCAAACGT
TGCCTGAATC CAGGCGGTAT TTTCGTCGCA CAAAACGGCG TCTGCTTTTT ACAGCAGGAA
GAAGCCATCG ACAGCCATCG CAAACTCAGC CATTACTTCA GCGACGTTGG CTTTTATCAG
GCGGCGATCC CGACCTATTA CGGCGGCATC ATGACCTTTG CATGGGCGAC AGATAACGAT
GCCTTACGCC ATCTCTCAAC CGAAATTATT CAGGCGCGTT TTCTCGCTTC TGGCCTGAAA
TGCCGTTATT ACAATCCGGC AATCCATACG GCAGCTTTTG CCTTACCTCA GTATCTGCAA
GACGCACTGG CTTCACAGCC GTCCTAA
|
|---|
| Protein sequence | MAEKKQWHET LHDQFGQYFA VDNVLYHEKT DHQDLIIFEN AAFGRVMALD GVVQTTERDE
FIYHEMMTHV PLLAHGHAKH VLIIGGGDGA MLREVTRHKN VESITMVEID AGVVSFCRQY
LPNHNAGSYD DPRFKLVIDD GVNFVNQTSQ TFDVIISDCT DPIGPGESLF TSAFYEGCKR
CLNPGGIFVA QNGVCFLQQE EAIDSHRKLS HYFSDVGFYQ AAIPTYYGGI MTFAWATDND
ALRHLSTEII QARFLASGLK CRYYNPAIHT AAFALPQYLQ DALASQPS
|
|---|
| |