| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0111 |
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| Symbol | pilA |
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| ID | 6145287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 123625 |
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| End bp | 124065 |
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| Gene Length | 441 bp |
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| Protein Length | 146 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641615012 |
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| Product | putative major pilin subunit |
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| Protein accession | YP_001742228 |
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| Protein GI | 170682801 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4969] Tfp pilus assembly protein, major pilin PilA |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.273778 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 0.482641 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACAAGC AACGCGGTTT TACACTTATC GAACTGATGG TGGTTATTGG CATCATTGCC
ATTTTAAGCG CCATTGGTAT TCCCGCTTAT CAAAACTACC TGCGCAAAGC CGCACTCACC
GACATGCTAC AAACCTTTGT GCCTTACCGT ACCGCCGTAG AGTTGTGCGC GCTGGAACAT
GGTGGATTAA ATACCTGCGA CGGTGGCAGC AATGGTATTC CTTCGCCTAC CACCACCCGC
TATGTTTCAG CCATGAGTGT GGCAAAGGGC GTGGTGTCGC TGACCGGGCA AGAAAGTCTC
AATGGGCTAA GCGTCGTCAT GACGCCGGGT TGGGATAACG CAAACGGCGT CACCGGCTGG
ACGCGCAACT GCAATATTCA AAGTGACAGC GCATTGCAGC AAGCCTGCGA AGATGTCTTC
CGCTTTGATG ACGCCAACTA A
|
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| Protein sequence | MDKQRGFTLI ELMVVIGIIA ILSAIGIPAY QNYLRKAALT DMLQTFVPYR TAVELCALEH
GGLNTCDGGS NGIPSPTTTR YVSAMSVAKG VVSLTGQESL NGLSVVMTPG WDNANGVTGW
TRNCNIQSDS ALQQACEDVF RFDDAN
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