| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0101 |
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| Symbol | lpxC |
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| ID | 6145349 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 113191 |
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| End bp | 114108 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641615002 |
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| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
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| Protein accession | YP_001742218 |
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| Protein GI | 170681175 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
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| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000241937 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.583142 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCAAAC AAAGGACACT TAAACGTATC GTTCAGGCGA CGGGTGTCGG TTTACATACC
GGCAAGAAAG TCACCCTGAC GTTACGCCCT GCGCCGGCCA ACACCGGGGT CATCTATCGT
CGCACCGACT TGAATCCACC GGTAGATTTC CCGGCCGATG CCAAATCTGT GCGTGATACC
ATGCTCTGTA CGTGTCTGGT CAACGAGCAT GATGTACGGA TTTCAACCGT AGAGCACCTC
AATGCTGCTC TCGCGGGCTT GGGCATCGAT AACATTGTTA TCGAAGTTAA CGCGCCGGAA
ATCCCGATCA TGGACGGCAG CGCCGCTCCG TTTGTATACC TGCTGCTTGA CGCCGGTATC
GACGAGCTGA ACTGCGCCAA GAAATTTGTT CGCATCAAAG AGACTGTTCG TGTCGAAGAT
GGCGATAAGT GGGCTGAATT TAAGCCGTAC AATGGTTTTT CGCTGGATTT CACCATCGAT
TTTAACCATC CGGCTATTGA TTCCAGCAAC CAGCGCTATG CGATGAACTT CTCCGCTGAT
GCGTTTATGC GCCAGATCAG CCGTGCGCGT ACGTTCGGTT TCATGCGTGA TATCGAATAT
CTGCAGTCCC GTGGTTTGTG CCTGGGCGGC AGCTTCGATT GTGCCATCGT TGTTGACGAT
TATCGCGTAC TGAACGAAGA CGGCCTGCGT TTTGAAGACG AATTTGTGCG TCACAAAATG
CTCGATGCGA TCGGTGACTT GTTCATGTGT GGTCACAATA TTATTGGTGC ATTTACCGCT
TATAAATCTG GTCATGCACT GAATAACAAA CTGCTGCAGG CTGTCCTTGC AAAACAGGAA
GCCTGGGAAT ATGTGACCTT CCAGGACGAC GCAGAACTGC CGTTGGCCTT CAAAGCGCCT
TCAGCCGTAC TGGCATAA
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| Protein sequence | MIKQRTLKRI VQATGVGLHT GKKVTLTLRP APANTGVIYR RTDLNPPVDF PADAKSVRDT
MLCTCLVNEH DVRISTVEHL NAALAGLGID NIVIEVNAPE IPIMDGSAAP FVYLLLDAGI
DELNCAKKFV RIKETVRVED GDKWAEFKPY NGFSLDFTID FNHPAIDSSN QRYAMNFSAD
AFMRQISRAR TFGFMRDIEY LQSRGLCLGG SFDCAIVVDD YRVLNEDGLR FEDEFVRHKM
LDAIGDLFMC GHNIIGAFTA YKSGHALNNK LLQAVLAKQE AWEYVTFQDD AELPLAFKAP
SAVLA
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