| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TRQ2_1642 |
|---|
| Symbol | |
|---|
| ID | 6093092 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga sp. RQ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010483 |
|---|
| Strand | + |
|---|
| Start bp | 1663992 |
|---|
| End bp | 1664669 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642488843 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001739660 |
|---|
| Protein GI | 170289422 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02254] HAD superfamily (subfamily IA) hydrolase, TIGR02254 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAAAAGG GAGTTCTGTT CGATTTAGAC GGAACGATTC TGGATTTTGA AAAGAGCGAA
GATCAGGCTC TGAAAAGAAC CTTCCTGAAG TACGGAATTC CTCTCACCGA GGATCAGGTG
TTTTTGTACA GAGAAATAAA CAGGAAATGG TGGAAGCTGC TTGCAGAAGG CAAGGTGTCG
AAAGATGTCG TTGTTGTTGC CAGATTCGAA GAATTTCTGA AAACGCTGAA CATCCCACTG
GATCCAAAAG AGGTTGCAAA AGATTATCTG GAGTTTCTCT CTGAAGAAGC TCATTTCCTT
CCAGGTGCAG AAGAATTCCT CGAAAGGCTG AAGAAGAAAG ATCTTCGAAT GGCTGCTGTG
ACGAACGGAG TCAGGTTCGT TCAGGAAAAA AGAAGCAGGA AGCTGAAACT CGACAGATTC
TTCGAGTTCG TCCTCACCTC CGAAGAAGCG GGAGTCGAAA AACCAGATCC ACACATCTTC
TGGATGGCAC TCGAAAGAAT GAAATTGAAA AAGGAAGAAG TCCTCTATGT GGGGGACGAT
CTCAGCAGTG ATCTCAAGGG TGCCAGAAAC ACCGGGATAG ATTTCGTGCT CTTCTCACCT
GACGGTGACT CCTCTGGAGA TTTCCCGGTT GCAAGGAATT TCGAAGAACT GGAGAAGATA
GTAGAAGAGC TTCTGTGA
|
|---|
| Protein sequence | MKKGVLFDLD GTILDFEKSE DQALKRTFLK YGIPLTEDQV FLYREINRKW WKLLAEGKVS
KDVVVVARFE EFLKTLNIPL DPKEVAKDYL EFLSEEAHFL PGAEEFLERL KKKDLRMAAV
TNGVRFVQEK RSRKLKLDRF FEFVLTSEEA GVEKPDPHIF WMALERMKLK KEEVLYVGDD
LSSDLKGARN TGIDFVLFSP DGDSSGDFPV ARNFEELEKI VEELL
|
|---|
| |