| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_4244 |
|---|
| Symbol | rbsC |
|---|
| ID | 6067943 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | - |
|---|
| Start bp | 4693735 |
|---|
| End bp | 4694700 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641603681 |
|---|
| Product | ribose ABC transporter permease protein |
|---|
| Protein accession | YP_001727167 |
|---|
| Protein GI | 170022213 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00281805 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACAACCC AGACTGTCTC TGGTCGCCGT TATTTCACGA AAGCGTGGCT GATGGAGCAG
AAATCGCTTA TCGCTCTGCT GGTGCTGATC GCGATTGTCT CGACGTTAAG CCCGAACTTT
TTCACCATCA ATAACTTATT CAATATTCTC CAGCAAACCT CAGTGAACGC CATTATGGCG
GTCGGGATGA CGCTGGTGAT CCTGACGTCG GGCATCGACT TATCGGTAGG TTCTCTGTTG
GCGCTGACCG GCGCAGTTGC TGCATCTATC GTCGGCATTG AAGTCAATGC GCTGGTGGCT
GTCGCTGCTG CTCTCGCGTT AGGTGCCGCA ATTGGTGCGG TAACCGGGGT GATTGTAGCG
AAAGGTCGCG TCCAGGCGTT TATCGCTACG CTGGTTATGA TGCTTTTACT GCGCGGCGTG
ACCATGGTTT ATACCAACGG TAGCCCAGTG AATACCGGCT TTACTGAGAA CGCCGATCTG
TTTGGCTGGT TTGGTATTGG TCGTCCGCTG GGCGTACCGA CGCCAGTCTG GATCATGGGA
ATTGTCTTCC TCGCGGCCTG GTACATGCTG CATCACACGC GTCTGGGGCG TTACATCTAC
GCGCTGGGCG GCAACGAAGC GGCAACGCGT CTTTCTGGTA TCAACGTCAA TAAAATCAAA
ATCATCGTCT ATTCTCTTTG TGGTCTGCTG GCATCGCTGG CCGGGATCAT TGAAGTGGCG
CGTCTCTCCT CCGCACAACC CACGGCGGGG ACTGGCTATG AGCTGGATGC TATTGCTGCG
GTGGTTCTGG GCGGTACGAG TCTGGCGGGC GGAAAAGGTC GCATTGTTGG GACGTTGATC
GGCGCATTAA TTCTTGGCTT CCTTAATAAT GGATTGAATT TGTTAGGTGT TTCCTCCTAT
TACCAGATGA TCGTCAAAGC GGTGGTGATT TTGCTGGCGG TGCTGGTAGA CAACAAAAAG
CAGTAA
|
|---|
| Protein sequence | MTTQTVSGRR YFTKAWLMEQ KSLIALLVLI AIVSTLSPNF FTINNLFNIL QQTSVNAIMA
VGMTLVILTS GIDLSVGSLL ALTGAVAASI VGIEVNALVA VAAALALGAA IGAVTGVIVA
KGRVQAFIAT LVMMLLLRGV TMVYTNGSPV NTGFTENADL FGWFGIGRPL GVPTPVWIMG
IVFLAAWYML HHTRLGRYIY ALGGNEAATR LSGINVNKIK IIVYSLCGLL ASLAGIIEVA
RLSSAQPTAG TGYELDAIAA VVLGGTSLAG GKGRIVGTLI GALILGFLNN GLNLLGVSSY
YQMIVKAVVI LLAVLVDNKK Q
|
|---|
| |