Gene EcolC_3957 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_3957 
SymbolnrfA 
ID6064480 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp4344649 
End bp4346085 
Gene Length1437 bp 
Protein Length478 aa 
Translation table11 
GC content53% 
IMG OID641603370 
Productcytochrome c552 
Protein accessionYP_001726885 
Protein GI170021931 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit 
TIGRFAM ID[TIGR03152] formate-dependent cytochrome c nitrite reductase, c552 subunit 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAGGA TAAAAATAAA CGCACGCCGT ATCTTCAGCT TATTGATTCC TTTTTTCTTT 
TTCACTTCTG TTCACGCTGA ACAAACGGCT GCTCCCGCAA AACCTGTAAC TGTGGAAGCG
AAGAATGAAA CCTTTGCCCC GCAGCATCCC GATCAATATC TCTCCTGGAA AGCCACCTCG
GAACAGTCAG AGCGTGTTGA CGCCCTGGCG GAAGATCCAC GGCTGGTGAT CCTGTGGGCG
GGGTATCCCT TCTCGCGCGA TTACAACAAG CCGCGTGGAC ATGCCTTTGC TGTGACCGAT
GTGCGTGAAA CCCTGCGTAC CGGTGCGCCG AAAAACGCTG AAGATGGTCC GCTACCGATG
GCGTGCTGGA GTTGTAAAAG CCCGGATGTG GCGCGTCTGA TCCAGAAAGA CGGCGAAGAT
GGCTACTTCC ACGGTAAGTG GGCGCGCGGC GGCCCGGAAA TCGTCAACAA CTTAGGTTGT
GCCGACTGCC ATAACACCGC CTCACCAGAG TTCGCCAAAG GCAAACCGGA GTTAACCCTT
TCCCGTCCGT ATGCGGCTCG CGCGATGGAA GCCATTGGTA AACCTTTTGA GAAAGCCGGA
CGTTTCGACC AGCAATCGAT GGTTTGCGGT CAGTGCCATG TGGAGTATTA CTTCGACGGC
AAAAACAAAG CGGTTAAATT CCCGTGGGAT GACGGCATGA AAGTCGAAAA TATGGAGCAG
TATTACGACA AAATTGCCTT CTCTGACTGG ACTAACTCCC TGTCGAAAAC GCCAATGCTG
AAAGCGCAGC ACCCGGAATA TGAAACCTGG ACAGCGGGCA TTCACGGTAA AAACAACGTG
ACCTGTATCG ACTGCCATAT GCCAAAAGTG CAGAACGCCG AAGGCAAACT CTACACCGAC
CATAAAATTG GTAATCCGTT TGATAACTTC GCCCAGACTT GTGCGAACTG CCATACCCAG
GACAAAGCTG CCTTGCAAAA AGTGGTCGCG GAACGTAAGC AGTCGATTAA CGACCTGAAA
ATCAAGGTTG AAGATCAACT GGTTCACGCT CACTTCGAAG CGAAAGCGGC GCTGGATGCA
GGCGCGACGG AAGCCGAAAT GAAGCCGATT CAGGACGATA TCCGTCATGC CCAGTGGCGT
TGGGATCTGG CGATCGCTTC CCACGGCATT CATATGCACG CACCGGAAGA AGGTCTGAGG
ATGCTCGGTA CGGCGATGGA TAAAGCGGCG GATGCGCGCA CCAAACTGGC GCGCCTGCTG
GCGACCAAAG GCATCACCCA TGAAATCCAG ATCCCGGATA TCTCGACCAA AGAGAAAGCC
CAGCAGGCCA TTGGCCTGAA CATGGAACAA ATCAAGGCCG AGAAGCAGGA CTTCATCAAA
ACGGTGATCC CGCAGTGGGA AGAACAGGCA CGTAAAAATG GTCTGTTAAG CCAATAA
 
Protein sequence
MTRIKINARR IFSLLIPFFF FTSVHAEQTA APAKPVTVEA KNETFAPQHP DQYLSWKATS 
EQSERVDALA EDPRLVILWA GYPFSRDYNK PRGHAFAVTD VRETLRTGAP KNAEDGPLPM
ACWSCKSPDV ARLIQKDGED GYFHGKWARG GPEIVNNLGC ADCHNTASPE FAKGKPELTL
SRPYAARAME AIGKPFEKAG RFDQQSMVCG QCHVEYYFDG KNKAVKFPWD DGMKVENMEQ
YYDKIAFSDW TNSLSKTPML KAQHPEYETW TAGIHGKNNV TCIDCHMPKV QNAEGKLYTD
HKIGNPFDNF AQTCANCHTQ DKAALQKVVA ERKQSINDLK IKVEDQLVHA HFEAKAALDA
GATEAEMKPI QDDIRHAQWR WDLAIASHGI HMHAPEEGLR MLGTAMDKAA DARTKLARLL
ATKGITHEIQ IPDISTKEKA QQAIGLNMEQ IKAEKQDFIK TVIPQWEEQA RKNGLLSQ